PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qp5C_

Fold library id	PDB Header	Molecule	Title
c3qp5C_	PDB header: transcription	Chain: C: PDB Molecule: cvir transcriptional regulator;	PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)

Links to external resources
Added to library: Sat Apr 2 09:13:37 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P L P A G L T A S Q Q W T L L E W I H M A G H I E T E N E L K A F L D Q V L S Q A P S E R L L L A L G R L N N Q N Q I Q R L E R V L N V S Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
S S S
S
T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P S D W L D Q Y M K E N Y A Q H D P I L R I H L G Q G P V M W E E R F N R A K G A E E K R F I A E A T Q N G M G S G I T F S A A S E R N N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T
T T T T S
T T S S
S S
T T T T T T S T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G S I L S I A G R E P G R N A A L V A M L N C L T P H L H Q A A I R V A N L L S Q R E Y D I F H W M S R G K T N W E I A T I L D I S E R T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T G G G
T T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . .

Sequence K F H V A N V I R K L N A N N R T H A I V L G M H L A M P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	L	P	A	G	L	T	A	S	Q	Q	W	T	L	L	E	W	I	H	M	A	G	H	I	E	T	E	N	E	L	K	A	F	L	D	Q	V	L	S	Q	A	P	S	E	R	L	L	L	A	L	G	R	L	N	N	Q	N	Q	I	Q	R	L	E	R	V	L	N	V	S	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	S			S															S	S		S											T	T	S													S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	S	D	W	L	D	Q	Y	M	K	E	N	Y	A	Q	H	D	P	I	L	R	I	H	L	G	Q	G	P	V	M	W	E	E	R	F	N	R	A	K	G	A	E	E	K	R	F	I	A	E	A	T	Q	N	G	M	G	S	G	I	T	F	S	A	A	S	E	R	N	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T	T	T	T		T	T	T	T	S		T	T	S	S									S	S														T	T	T	T	T	T	S									T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	S	I	L	S	I	A	G	R	E	P	G	R	N	A	A	L	V	A	M	L	N	C	L	T	P	H	L	H	Q	A	A	I	R	V	A	N	L	L	S	Q	R	E	Y	D	I	F	H	W	M	S	R	G	K	T	N	W	E	I	A	T	I	L	D	I	S	E	R	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	T	T	G	G	G																																						T	T	T											T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence	K	F	H	V	A	N	V	I	R	K	L	N	A	N	N	R	T	H	A	I	V	L	G	M	H	L	A	M	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T		S	S								T