PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3sztB_

Fold library id	PDB Header	Molecule	Title
c3sztB_	PDB header: transcription	Chain: B: PDB Molecule: quorum-sensing control repressor;	PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone

Links to external resources
Added to library: Sat Oct 1 10:42:50 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E G Y L E I L S R I T T E E E F F S L V L E I C G N Y G F E F F S F G A R A P F P L T A P K Y H F L S N Y P G E W K S R Y I S E D Y T S I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S T T T
S B
S T T S
S
T T G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P I V R H G L L E Y T P L I W R F F W E E A L H H G I R H G W S I P V R G K Y G L I S M L S L V R S S S I A A T E I L E K E S F L L W I T S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M L Q A T F G D L L A P R I V P E S N V R L T A R E T E M L K W T A V G K T Y G E I G L I L S I D Q R T V K F H I V N A M R K L N S S N K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
T T
T
T T
S S

. . . . . . . . . 220 . . .

Sequence E A T M K A Y A I G L L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	G	Y	L	E	I	L	S	R	I	T	T	E	E	E	F	F	S	L	V	L	E	I	C	G	N	Y	G	F	E	F	F	S	F	G	A	R	A	P	F	P	L	T	A	P	K	Y	H	F	L	S	N	Y	P	G	E	W	K	S	R	Y	I	S	E	D	Y	T	S	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S					T	T			S														T	T	T		S	B										S	T	T	S									S											T	T	G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	I	V	R	H	G	L	L	E	Y	T	P	L	I	W	R	F	F	W	E	E	A	L	H	H	G	I	R	H	G	W	S	I	P	V	R	G	K	Y	G	L	I	S	M	L	S	L	V	R	S	S	S	I	A	A	T	E	I	L	E	K	E	S	F	L	L	W	I	T	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S													T	T	T		S										G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	L	Q	A	T	F	G	D	L	L	A	P	R	I	V	P	E	S	N	V	R	L	T	A	R	E	T	E	M	L	K	W	T	A	V	G	K	T	Y	G	E	I	G	L	I	L	S	I	D	Q	R	T	V	K	F	H	I	V	N	A	M	R	K	L	N	S	S	N	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																G	G	G	G																T	T											T																	T	T		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	E	A	T	M	K	A	Y	A	I	G	L	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T