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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3jroC_

Fold library idPDB HeaderMoleculeTitle
c3jroC_PDB header: transport protein, structural proteinChain: C: PDB Molecule: nucleoporin nup84;PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice


Added to library: Sat Aug 28 16:38:35 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEARFWHLVELLLVFRNADLDLDEXELHPYNSR
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Known secondary structure (DSSP)

TTTTT
SSTSS
S

S
TTT


SSTT


 .........80.........90.........100.........110.........120.........130.........140
Sequence GLFEKKLXQDNKQLYQIWIVXVWLKENTYVXERPPTSKWLNSITSGGLKSCDLDFPLRENTNVLDVKDKE
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Known secondary structure (DSSP) S
GGGTTTTS
TT








SSSSS
SSGGGGGGSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence EDHIFFKYIYELILAGAIDEALEEAKLSDNISICXILCGIQEYLNPVIDTQIANEFNTQQGIKKHSLWRR
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Known secondary structure (DSSP) TT
TTTT
T
S

SS
GGGTTT
SS



S
 .........220.........230.........240.........250.........260.........270.........280
Sequence TVYSLSQQAGLDPYERAIYSYLSGAIPNQEVLQYSDWESDLHIHLNQILQTEIENYLLENNQVGTDELIL
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Known secondary structure (DSSP) TT
SS

S


GGG
S

SSTTSS

GGG

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence PLPSHALTVQEVLNRVASRHPSESEHPIRVLXASVILDSLPSVIHSSVEXLLDVVDKPYLLRIVTHLAIC
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Known secondary structure (DSSP)







GGGS
SSTTTST




GGGSTTTGGGTT
 .........360.........370.........
Sequence LDIINPGSVEEVDKSKLITTYISLLKLQG
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Known secondary structure (DSSP) ST

S
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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