Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	S	S	Q	E	L	R	S	N	F	Y	R	E	K	N	L	M	E	T	V	F	D	A	L	K	A	M	G	K	A	T	S	I	E	L	A	A	R	L	D	I	S	R	E	E	V	L	N	E	L	W	E	L	K	K	A	G	F	V
Secondary structure
SS confidence
Disorder		?	?	?	?								?																		?	?	?								?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	K	S	A	Y	T	W	R	V	A	D	N	N	V	Q	Q	E	Q	P	A	Q	A	E	L	P	E	E	I	T	T	A	T	V	A	K	I	S	E	C	D	L	T	A	T	I	E	Q	R	G	P	Q	T	A	D	E	L	A	T	L	F
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?	?	?	?	?	?	?						?	?		?	?	?										?	?	?	?	?	?	?								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	T	T	S	R	K	V	A	S	T	L	A	M	A	I	S	K	G	R	L	I	R	V	N	Q	G	G	K	F	R	Y	C	I	P	G	D	N	L	P	A	E	P	K	A	A	S	V	S	P	L	W	L	S	A	S	S	S	A	C	H
Secondary structure
SS confidence
Disorder			?	?	?												?		?																			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence		G	V	L	I	I	T	V	I	T	P	S	P	T	K	N	S	A	T	K	M	P	E	N
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1mkm chain A domain 1 Region: 92 - 150 Aligned: 57 Modelled: 59 Confidence: 94.5% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Transcriptional regulator IclR, N-terminal domain Phyre2 PDB 2xro chain E Region: 92 - 150 Aligned: 58 Modelled: 59 Confidence: 94.2% Identity: 16% PDB header:dna-binding protein/dna Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv; PDBTitle: crystal structure of ttgv in complex with its dna operator Phyre2 PDB 1mkm chain A Region: 92 - 150 Aligned: 57 Modelled: 59 Confidence: 93.1% Identity: 18% PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr Phyre2 PDB 1z05 chain A domain 1 Region: 101 - 144 Aligned: 44 Modelled: 44 Confidence: 92.5% Identity: 14% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: ROK associated domain Phyre2 PDB 1qzz chain A domain 1 Region: 109 - 151 Aligned: 43 Modelled: 43 Confidence: 92.2% Identity: 21% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Plant O-methyltransferase, N-terminal domain Phyre2 PDB 1z6r chain A domain 1 Region: 98 - 144 Aligned: 47 Modelled: 47 Confidence: 91.5% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: ROK associated domain Phyre2 PDB 3jth chain A Region: 86 - 152 Aligned: 64 Modelled: 67 Confidence: 91.1% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:transcription activator hlyu; PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6 Phyre2 PDB 2o0y chain B Region: 91 - 150 Aligned: 58 Modelled: 60 Confidence: 90.9% Identity: 14% PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp. Phyre2 PDB 1lva chain A domain 3 Region: 110 - 146 Aligned: 37 Modelled: 37 Confidence: 90.8% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: C-terminal fragment of elongation factor SelB Phyre2 PDB 2d1h chain A domain 1 Region: 99 - 153 Aligned: 54 Modelled: 0 Confidence: 90.5% Identity: 30% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: TrmB-like Phyre2 PDB 1jhf chain A domain 1 Region: 89 - 142 Aligned: 53 Modelled: 54 Confidence: 90.2% Identity: 25% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: LexA repressor, N-terminal DNA-binding domain Phyre2 PDB 1wi9 chain A Region: 99 - 156 Aligned: 58 Modelled: 58 Confidence: 90.0% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PCI domain (PINT motif) Phyre2 PDB 3gwz chain B Region: 109 - 151 Aligned: 43 Modelled: 43 Confidence: 89.5% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:mmcr; PDBTitle: structure of the mitomycin 7-o-methyltransferase mmcr Phyre2 PDB 2zkz chain C Region: 86 - 152 Aligned: 64 Modelled: 67 Confidence: 89.5% Identity: 9% PDB header:transcription Chain: C: PDB Molecule:transcriptional repressor pagr; PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis Phyre2 PDB 2quf chain B Region: 21 - 147 Aligned: 124 Modelled: 127 Confidence: 88.9% Identity: 15% PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus Phyre2 PDB 2zme chain B Region: 101 - 151 Aligned: 51 Modelled: 51 Confidence: 88.8% Identity: 25% PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Phyre2 PDB 3cuo chain B Region: 86 - 158 Aligned: 72 Modelled: 73 Confidence: 88.5% Identity: 14% PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav; PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli Phyre2 PDB 2r3s chain A Region: 85 - 147 Aligned: 62 Modelled: 63 Confidence: 87.9% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative o-methyltransferase (npun_r0239) from2 nostoc punctiforme pcc 73102 at 2.15 a resolution Phyre2 PDB 3bwg chain A domain 1 Region: 90 - 149 Aligned: 60 Modelled: 60 Confidence: 87.6% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: GntR-like transcriptional regulators Phyre2 PDB 1z6r chain C Region: 98 - 153 Aligned: 56 Modelled: 56 Confidence: 87.5% Identity: 11% PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli Phyre2 PDB 1tw3 chain A Region: 108 - 165 Aligned: 57 Modelled: 57 Confidence: 86.8% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:carminomycin 4-o-methyltransferase; PDBTitle: crystal structure of carminomycin-4-o-methyltransferase2 (dnrk) in complex with s-adenosyl-l-homocystein (sah) and3 4-methoxy-e-rhodomycin t (m-et) Phyre2 PDB 2l4a chain A Region: 1 - 61 Aligned: 59 Modelled: 59 Confidence: 80.7% Identity: 20% PDB header:dna binding protein Chain: A: PDB Molecule:leucine responsive regulatory protein; PDBTitle: nmr structure of the dna-binding domain of e.coli lrp Phyre2 1 d1mkma1 2 c2xroE_ 3 c1mkmA_ 4 d1z05a1 5 d1qzza1 6 d1z6ra1 7 c3jthA_ 8 c2o0yB_ 9 d1lvaa3 10 d2d1ha1 11 d1jhfa1 12 d1wi9a_ 13 c3gwzB_ 14 c2zkzC_ 15 c2qufB_ 16 c2zmeB_ 17 c3cuoB_ 18 c2r3sA_ 19 d3bwga1 20 c1z6rC_ 21 22 23 24 25 c1tw3A_ 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 c2l4aA_ 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1mkma1 94.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 2 c2xroE_ 94.2 16 PDB header:dna-binding protein/dna Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv; PDBTitle: crystal structure of ttgv in complex with its dna operator 3 c1mkmA_ 93.1 18 PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr 4 d1z05a1 92.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 5 d1qzza1 92.2 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain 6 d1z6ra1 91.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 7 c3jthA_ 91.1 14 PDB header:transcription Chain: A: PDB Molecule:transcription activator hlyu; PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6 8 c2o0yB_ 90.9 14 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp. 9 d1lvaa3 90.8 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 10 d2d1ha1 90.5 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 11 d1jhfa1 90.2 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 12 d1wi9a_ 90.0 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 13 c3gwzB_ 89.5 23 PDB header:transferase Chain: B: PDB Molecule:mmcr; PDBTitle: structure of the mitomycin 7-o-methyltransferase mmcr 14 c2zkzC_ 89.5 9 PDB header:transcription Chain: C: PDB Molecule:transcriptional repressor pagr; PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis 15 c2qufB_ 88.9 15 PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus 16 c2zmeB_ 88.8 25 PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 17 c3cuoB_ 88.5 14 PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav; PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli 18 c2r3sA_ 87.9 18 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative o-methyltransferase (npun_r0239) from2 nostoc punctiforme pcc 73102 at 2.15 a resolution 19 d3bwga1 87.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 20 c1z6rC_ 87.5 11 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 21 d1r1ua_ not modelled 87.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 22 c2g7uB_ not modelled 87.2 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1 23 d1okra_ not modelled 87.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 24 c3mq0A_ not modelled 87.0 21 PDB header:transcription repressor Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon; PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr 25 c1tw3A_ 86.8 23 PDB header:transferase Chain: A: PDB Molecule:carminomycin 4-o-methyltransferase; PDBTitle: crystal structure of carminomycin-4-o-methyltransferase2 (dnrk) in complex with s-adenosyl-l-homocystein (sah) and3 4-methoxy-e-rhodomycin t (m-et) 26 c2ip2B_ not modelled 86.5 11 PDB header:transferase Chain: B: PDB Molecule:probable phenazine-specific methyltransferase; PDBTitle: structure of the pyocyanin biosynthetic protein phzm 27 d1sfxa_ not modelled 85.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 28 c1xduA_ not modelled 85.2 21 PDB header:transferase Chain: A: PDB Molecule:protein rdmb; PDBTitle: crystal structure of aclacinomycin-10-hydroxylase (rdmb) in complex2 with sinefungin (sfg) 29 c3fmsA_ not modelled 85.0 19 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of tm0439, a gntr transcriptional2 regulator 30 d1j5ya1 not modelled 84.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 31 d1biaa1 not modelled 84.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 32 c1x1aA_ not modelled 84.3 14 PDB header:transferase Chain: A: PDB Molecule:crtf-related protein; PDBTitle: crystal structure of bchu complexed with s-adenosyl-l-methionine 33 c3r4kD_ not modelled 84.0 22 PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution 34 c3lstB_ not modelled 83.8 22 PDB header:transferase Chain: B: PDB Molecule:calo1 methyltransferase; PDBTitle: crystal structure of calo1, methyltransferase in calicheamicin2 biosynthesis, sah bound form 35 c3f6vA_ not modelled 83.3 21 PDB header:transcription regulator Chain: A: PDB Molecule:possible transcriptional regulator, arsr family PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance 36 c2zmeA_ not modelled 83.2 18 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 37 d2hs5a1 not modelled 83.1 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 38 d1stza1 not modelled 83.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain 39 c2pjpA_ not modelled 82.8 10 PDB header:translation/rna Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna 40 c3ihuA_ not modelled 82.6 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of dna binding protein (yp_298823.1) from ralstonia2 eutropha jmp134 at 1.92 a resolution 41 d2ev0a1 not modelled 82.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 42 c1z05A_ not modelled 82.2 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 43 c3cuqA_ not modelled 82.2 18 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 44 c2it0A_ not modelled 81.8 12 PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii 45 c3f6oB_ not modelled 80.8 21 PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566 46 c2l4aA_ 80.7 20 PDB header:dna binding protein Chain: A: PDB Molecule:leucine responsive regulatory protein; PDBTitle: nmr structure of the dna-binding domain of e.coli lrp 47 d1sd4a_ not modelled 79.8 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 48 c1j5yA_ not modelled 79.3 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, biotin repressor family; PDBTitle: crystal structure of transcriptional regulator (tm1602) from2 thermotoga maritima at 2.3 a resolution 49 c2v9vA_ not modelled 79.2 19 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 50 c3r0aB_ not modelled 78.9 16 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196) 51 c2plyB_ not modelled 78.9 16 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 52 d1qbjc_ not modelled 78.5 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 53 d1tw3a1 not modelled 78.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain 54 d2gxba1 not modelled 78.1 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 55 d1p6ra_ not modelled 77.8 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 56 c2y75F_ not modelled 77.5 13 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 57 d1u2wa1 not modelled 77.0 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 58 c2fe3B_ not modelled 76.1 15 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 59 c2di3A_ not modelled 75.9 10 PDB header:transcription Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family; PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum 60 c3eqxB_ not modelled 75.6 20 PDB header:dna binding protein Chain: B: PDB Molecule:fic domain containing transcriptional regulator; PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution 61 c2kfsA_ not modelled 74.8 24 PDB header:dna-binding protein Chain: A: PDB Molecule:conserved hypothetical regulatory protein; PDBTitle: nmr structure of rv2175c 62 d1xd7a_ not modelled 74.6 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 63 c2hs5A_ not modelled 74.6 11 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator gntr; PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1 64 d1qgpa_ not modelled 74.3 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 65 c3f8mA_ not modelled 74.0 19 PDB header:transcription Chain: A: PDB Molecule:gntr-family protein transcriptional regulator; PDBTitle: crystal structure of phnf from mycobacterium smegmatis 66 c2ia2D_ not modelled 73.9 10 PDB header:transcription Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1 67 d1hw1a1 not modelled 73.9 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 68 c1f5tA_ not modelled 73.0 13 PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence 69 c2k4bA_ not modelled 72.8 24 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: copr repressor structure 70 d3ctaa1 not modelled 72.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 71 c1fp2A_ not modelled 72.5 13 PDB header:transferase Chain: A: PDB Molecule:isoflavone o-methyltransferase; PDBTitle: crystal structure analysis of isoflavone o-methyltransferase 72 d1s3ja_ not modelled 71.8 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 73 c3g3zA_ not modelled 71.7 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 74 c3k2zA_ not modelled 71.5 29 PDB header:hydrolase Chain: A: PDB Molecule:lexa repressor; PDBTitle: crystal structure of a lexa protein from thermotoga maritima 75 c2xigA_ not modelled 71.4 12 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 76 c2x4hA_ not modelled 71.2 8 PDB header:transcription Chain: A: PDB Molecule:hypothetical protein sso2273; PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus 77 d1ub9a_ not modelled 71.2 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 78 c3dp7B_ not modelled 70.8 19 PDB header:transferase Chain: B: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of sam-dependent methyltransferase from bacteroides2 vulgatus atcc 8482 79 c3bwgA_ not modelled 70.7 21 PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 80 c3i53A_ not modelled 70.5 23 PDB header:transferase Chain: A: PDB Molecule:o-methyltransferase; PDBTitle: crystal structure of an o-methyltransferase (ncsb1) from2 neocarzinostatin biosynthesis in complex with s-adenosyl-l-3 homocysteine (sah) 81 c1e2xA_ not modelled 70.2 17 PDB header:transcriptional regulation Chain: A: PDB Molecule:fatty acid metabolism regulator protein; PDBTitle: fadr, fatty acid responsive transcription factor from e.2 coli 82 c1wsuA_ not modelled 70.0 16 PDB header:translation/rna Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna 83 d1ku9a_ not modelled 69.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:DNA-binding protein Mj223 84 c3edpB_ not modelled 68.0 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 85 c3l09B_ not modelled 68.0 10 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution 86 d1v4ra1 not modelled 66.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 87 d2etha1 not modelled 66.6 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 88 c1zgaA_ not modelled 66.4 21 PDB header:plant protein, transferase Chain: A: PDB Molecule:isoflavanone 4'-o-methyltransferase'; PDBTitle: crystal structure of isoflavanone 4'-o-methyltransferase complexed2 with (+)-6a-hydroxymaackiain 89 c2v79B_ not modelled 66.1 24 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 90 d3bz6a2 not modelled 65.4 43 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PSPTO2686-like 91 d1lnwa_ not modelled 65.1 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 92 d1i1ga1 not modelled 64.9 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 93 d2a61a1 not modelled 64.5 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 94 d2fbia1 not modelled 64.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 95 d2isya1 not modelled 63.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 96 c3bj6B_ not modelled 61.9 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 97 d1ufma_ not modelled 61.3 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 98 c3neuA_ not modelled 60.9 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1836 protein; PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262 99 c2oqgA_ not modelled 60.7 25 PDB header:transcription Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein; PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1 100 c2vn2B_ not modelled 60.2 18 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 101 d2cyya1 not modelled 59.9 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 102 d1g3wa1 not modelled 59.9 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 103 c3i71B_ not modelled 59.2 28 PDB header:unknown function Chain: B: PDB Molecule:ethanolamine utilization protein eutk; PDBTitle: ethanolamine utilization microcompartment shell subunit, eutk c-2 terminal domain 104 c2dbbA_ not modelled 59.1 27 PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 105 d1l0oc_ not modelled 58.8 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 106 c1l0oC_ not modelled 58.8 27 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 107 d1mzba_ not modelled 58.8 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like 108 c1u5tB_ not modelled 58.5 18 PDB header:transport protein Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; PDBTitle: structure of the escrt-ii endosomal trafficking complex 109 c3bpxB_ not modelled 58.4 27 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of marr 110 c3by6C_ not modelled 58.2 16 PDB header:transcription regulator Chain: C: PDB Molecule:predicted transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni 111 c2h09A_ not modelled 58.2 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator mntr; PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli 112 c3oopA_ not modelled 57.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262 113 d1aoya_ not modelled 57.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 114 c3c7jA_ not modelled 57.0 22 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of transcriptional regulator (gntr family member)2 from pseudomonas syringae pv. tomato str. dc3000 115 d2cg4a1 not modelled 57.0 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 116 c2jscB_ not modelled 56.3 21 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050; PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis 117 c1w7pD_ not modelled 56.3 18 PDB header:protein transport Chain: D: PDB Molecule:vps36p, ylr417w; PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36) 118 d2bv6a1 not modelled 55.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 119 c1u5tA_ not modelled 55.3 19 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 120 c2w48D_ not modelled 54.9 20 PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0