PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3edpB_

Fold library id	PDB Header	Molecule	Title
c3edpB_	PDB header: structural genomics, unknown function	Chain: B: PDB Molecule: lin2111 protein;	PDBTitle: the crystal structure of the protein lin2111 (functionally2 unknown) from listeria innocua clip11262

Links to external resources
Added to library: Tue Mar 16 13:12:44 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K P L F E V I A S K I K D S I N R D E Y K T G X P N E T A L Q E I Y S S S R T T I R R A V D L L V E E G L V V R K N G V G L Y V Q P K L T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T T
T T S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q N I L E X T G V X L K K D I K D F Y I R K A G K F Y A E I F G X K E N E L V Y S I K F V Q K S E H G A T L D R L I L P L G L Y P D L Q A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T S T T G G G S T T
G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D F Q I I N I I E L V N S G K Y K L F E L E Q E L Q L I L A G N E Q I K N X H L N E N D P V F K L S S V F Y A E N D X P I A I Q Y H Y E D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
S
T T S S S
T T
T T T

. . . . . . . . . 220

Sequence E S T K Y V V D F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	P	L	F	E	V	I	A	S	K	I	K	D	S	I	N	R	D	E	Y	K	T	G	X	P	N	E	T	A	L	Q	E	I	Y	S	S	S	R	T	T	I	R	R	A	V	D	L	L	V	E	E	G	L	V	V	R	K	N	G	V	G	L	Y	V	Q	P	K	L	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T	S	S														T	T																T	T	S					T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	N	I	L	E	X	T	G	V	X	L	K	K	D	I	K	D	F	Y	I	R	K	A	G	K	F	Y	A	E	I	F	G	X	K	E	N	E	L	V	Y	S	I	K	F	V	Q	K	S	E	H	G	A	T	L	D	R	L	I	L	P	L	G	L	Y	P	D	L	Q	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																T	S		T	T	S												T	T											G	G	G	S	T	T			G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	F	Q	I	I	N	I	I	E	L	V	N	S	G	K	Y	K	L	F	E	L	E	Q	E	L	Q	L	I	L	A	G	N	E	Q	I	K	N	X	H	L	N	E	N	D	P	V	F	K	L	S	S	V	F	Y	A	E	N	D	X	P	I	A	I	Q	Y	H	Y	E	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G				S							T	T	S	S	S																										T	T													T	T	T
	.	.	.	.	.	.	.	.	.	220
Sequence	E	S	T	K	Y	V	V	D	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S