PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2it0A_

Fold library id	PDB Header	Molecule	Title
c2it0A_	PDB header: transcription/dna	Chain: A: PDB Molecule: iron-dependent repressor ider;	PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii

Links to external resources
Added to library: Tue Mar 16 13:16:15 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E L V D T T E M Y L R T I Y D L E E E G V T P L R A R I A E R L D Q S G P T V S Q T V S R M E R D G L L R V A G D R H L E L T E K G R A L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
T T
T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I A V M R K H R L A E R L L V D V I G L P W E E V H A E A C R W E H V M S E D V E R R L V K V L N N P T T S P F G N P I P G L V E L G V A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T
T T S
B
T T S
B
T S

. . . . .

Sequence E N L Y F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	L	V	D	T	T	E	M	Y	L	R	T	I	Y	D	L	E	E	E	G	V	T	P	L	R	A	R	I	A	E	R	L	D	Q	S	G	P	T	V	S	Q	T	V	S	R	M	E	R	D	G	L	L	R	V	A	G	D	R	H	L	E	L	T	E	K	G	R	A	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S															T	T												T	T																T	T	S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	A	V	M	R	K	H	R	L	A	E	R	L	L	V	D	V	I	G	L	P	W	E	E	V	H	A	E	A	C	R	W	E	H	V	M	S	E	D	V	E	R	R	L	V	K	V	L	N	N	P	T	T	S	P	F	G	N	P	I	P	G	L	V	E	L	G	V	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T															T	T	T													T	T	S			B		T	T	S		B								T	S
	.	.	.	.	.
Sequence	E	N	L	Y	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)