PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1mkmA_

Fold library id	PDB Header	Molecule	Title
c1mkmA_	PDB header: transcription	Chain: A: PDB Molecule: iclr transcriptional regulator;	PDBTitle: crystal structure of the thermotoga maritima iclr

Links to external resources
Added to library: Tue Mar 16 12:31:22 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N T L K K A F E I L D F I V K N P G D V S V S E I A E K F N M S V S N A Y K Y M V V L E E K G F V L R K K D K R Y V P G Y K L I E Y G S F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
B
T T
T T S
T T S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V L R R F N I R D I A H D H L V D I M K R T G E T V H L I L K D G F E G V Y I D K V E G E Q S I P M V S R L G M K V D L Y S T A S G K S I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S
T T S
S
S S
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A F V P E K E L K E Y L K I V E L K P K T P N T I T N P R V L K R E L E K I R K R G Y A V D N E E N E I G I M C V G V P I F D H N G Y P V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S T T
S S S S S S T T
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . .

Sequence G V S I S G V A R K F T E E K I E E Y S D V L K E K A E E I S R K L G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	T	L	K	K	A	F	E	I	L	D	F	I	V	K	N	P	G	D	V	S	V	S	E	I	A	E	K	F	N	M	S	V	S	N	A	Y	K	Y	M	V	V	L	E	E	K	G	F	V	L	R	K	K	D	K	R	Y	V	P	G	Y	K	L	I	E	Y	G	S	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T															S	S		B									T	T																T	T	S					T	T	S						T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	L	R	R	F	N	I	R	D	I	A	H	D	H	L	V	D	I	M	K	R	T	G	E	T	V	H	L	I	L	K	D	G	F	E	G	V	Y	I	D	K	V	E	G	E	Q	S	I	P	M	V	S	R	L	G	M	K	V	D	L	Y	S	T	A	S	G	K	S	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T		S									S	S											T	T	S				S			S	S					S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	F	V	P	E	K	E	L	K	E	Y	L	K	I	V	E	L	K	P	K	T	P	N	T	I	T	N	P	R	V	L	K	R	E	L	E	K	I	R	K	R	G	Y	A	V	D	N	E	E	N	E	I	G	I	M	C	V	G	V	P	I	F	D	H	N	G	Y	P	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																	S	S	T	T																			S	S					S	S	S	S	T	T											T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Sequence	G	V	S	I	S	G	V	A	R	K	F	T	E	E	K	I	E	E	Y	S	D	V	L	K	E	K	A	E	E	I	S	R	K	L	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								G	G	G																								T	T