PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3r4kD_

Fold library id	PDB Header	Molecule	Title
c3r4kD_	PDB header: dna binding protein	Chain: D: PDB Molecule: transcriptional regulator, iclr family;	PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution

Links to external resources
Added to library: Sat Apr 16 08:55:57 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X G T V S K A L T L L T Y F N H G R L E I G L S D L T R L S G X N K A T V Y R L X S E L Q E A G F V E Q V E R S Y R L G P Q V L R L A A L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B T T B S
S
T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E A S V P I L S A S R R V L R E L S E D T G E T T H L S L L Q G E Q L A S L S H A Y S S R N A T K V X X E D A E V L T F H G T A S G L A V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S T T
S S
S S
T T
T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A Y S E P S F V D A V L A A P L T A R T P Q T Q T D P A A I R A E I A E V R R T G L A Q S I G G F E A E V H S H A V P I F G P D R A V L G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
S S T T
S
S S S S T T
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . .

Sequence L A V A A P T S R X T P D Q K R T I P P A L R A A G L S L T E R I G G A C P P E F P T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T T
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	G	T	V	S	K	A	L	T	L	L	T	Y	F	N	H	G	R	L	E	I	G	L	S	D	L	T	R	L	S	G	X	N	K	A	T	V	Y	R	L	X	S	E	L	Q	E	A	G	F	V	E	Q	V	E	R	S	Y	R	L	G	P	Q	V	L	R	L	A	A	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T		B	T	T	B	S													S															T	T	S												T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	A	S	V	P	I	L	S	A	S	R	R	V	L	R	E	L	S	E	D	T	G	E	T	T	H	L	S	L	L	Q	G	E	Q	L	A	S	L	S	H	A	Y	S	S	R	N	A	T	K	V	X	X	E	D	A	E	V	L	T	F	H	G	T	A	S	G	L	A	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S																		S	S									T	T											S	S		S	S						T	T					T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	Y	S	E	P	S	F	V	D	A	V	L	A	A	P	L	T	A	R	T	P	Q	T	Q	T	D	P	A	A	I	R	A	E	I	A	E	V	R	R	T	G	L	A	Q	S	I	G	G	F	E	A	E	V	H	S	H	A	V	P	I	F	G	P	D	R	A	V	L	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S											S					S	S	T	T																			S						S	S	S	S	T	T											T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence	L	A	V	A	A	P	T	S	R	X	T	P	D	Q	K	R	T	I	P	P	A	L	R	A	A	G	L	S	L	T	E	R	I	G	G	A	C	P	P	E	F	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G																								T	T					T	T	S