PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2zmeB_

Fold library id	PDB Header	Molecule	Title
c2zmeB_	PDB header: protein transport	Chain: B: PDB Molecule: vacuolar protein-sorting-associated protein 36;	PDBTitle: integrated structural and functional model of the human2 escrt-ii complex

Links to external resources
Added to library: Tue Mar 16 13:32:49 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K N I S E A F E D L S K L M I K A K E M V E L S K S I A N K I K D K Q G D I T E D E T I R F K S Y L L S M G I A N P V T R E T Y G S G T Q Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
S T T
S S
S T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H M Q L A K Q L A G I L Q V P L E E R G G I M S L T E V Y C L V N R A R G M E L L S P E D L V N A C K M L E A L K L P L R L R V F D S G V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S S S
T T G G G T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V I E L Q S H K E E E M V A S A L E T V S E K G S L T S E E F A K L V G M S V L L A K E R L L L A E K M G H L C R D D S V E G L R F Y P N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
B
T
T S T T
G

. . . . .

Sequence F M T Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	N	I	S	E	A	F	E	D	L	S	K	L	M	I	K	A	K	E	M	V	E	L	S	K	S	I	A	N	K	I	K	D	K	Q	G	D	I	T	E	D	E	T	I	R	F	K	S	Y	L	L	S	M	G	I	A	N	P	V	T	R	E	T	Y	G	S	G	T	Q	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T																										S								S			S												T	T					S	S		S	T	T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	M	Q	L	A	K	Q	L	A	G	I	L	Q	V	P	L	E	E	R	G	G	I	M	S	L	T	E	V	Y	C	L	V	N	R	A	R	G	M	E	L	L	S	P	E	D	L	V	N	A	C	K	M	L	E	A	L	K	L	P	L	R	L	R	V	F	D	S	G	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	T	S																S	S	S													T	T	G	G	G	T		S							T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	I	E	L	Q	S	H	K	E	E	E	M	V	A	S	A	L	E	T	V	S	E	K	G	S	L	T	S	E	E	F	A	K	L	V	G	M	S	V	L	L	A	K	E	R	L	L	L	A	E	K	M	G	H	L	C	R	D	D	S	V	E	G	L	R	F	Y	P	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S																		S		B										T																	T	S							T	T								G
	.	.	.	.	.
Sequence	F	M	T	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	T	T