PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3eqxB_

Fold library id	PDB Header	Molecule	Title
c3eqxB_	PDB header: dna binding protein	Chain: B: PDB Molecule: fic domain containing transcriptional regulator;	PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution

Links to external resources
Added to library: Tue Mar 16 14:27:27 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X E W Q H L P P L P L D S K L A E L A E T L P I L K A C I P A R A A L A E L K Q A G E L L P N Q G L L I N L L P L L E A Q G S S E I E N I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T T T D K L F Q Y A Q E D S Q A D P X T K E A L R Y R T A L Y Q C F T Q L S N R P L C V T T A L E I C S T I K S V Q X D V R K V P G T S L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T S
G G G T S
S T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N Q A T G E V I Y T P P A G E S V I R D L L S N W E A F L H N Q D D V D P L I K X A X A H Y Q F E A I H P F I D G N G R T G R V L N I L Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S T
S
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence I D Q Q L L S A P I L Y L S R Y I V A H K Q D Y Y R L L L N V T T Q Q E W Q P W I I F I L N A V E Q T A K W T T H K I A A A R E L I A H T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence E Y V R Q Q L P K I Y S H E L V Q V I F E Q P Y C R I Q N L V E S G L A K R Q T A S V Y L K Q L C D I G V L E E V Q S G K E K L F V H P K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S
T T S
T T S
T T

. . . . . . . . . 360 . . . .

Sequence V T L X T K D S N Q F S R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	E	W	Q	H	L	P	P	L	P	L	D	S	K	L	A	E	L	A	E	T	L	P	I	L	K	A	C	I	P	A	R	A	A	L	A	E	L	K	Q	A	G	E	L	L	P	N	Q	G	L	L	I	N	L	L	P	L	L	E	A	Q	G	S	S	E	I	E	N	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S																																		S																					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	T	T	D	K	L	F	Q	Y	A	Q	E	D	S	Q	A	D	P	X	T	K	E	A	L	R	Y	R	T	A	L	Y	Q	C	F	T	Q	L	S	N	R	P	L	C	V	T	T	A	L	E	I	C	S	T	I	K	S	V	Q	X	D	V	R	K	V	P	G	T	S	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T			T	T	S																				G	G	G	T	S			S													T	S						S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	Q	A	T	G	E	V	I	Y	T	P	P	A	G	E	S	V	I	R	D	L	L	S	N	W	E	A	F	L	H	N	Q	D	D	V	D	P	L	I	K	X	A	X	A	H	Y	Q	F	E	A	I	H	P	F	I	D	G	N	G	R	T	G	R	V	L	N	I	L	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T										S																T					S																			S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	I	D	Q	Q	L	L	S	A	P	I	L	Y	L	S	R	Y	I	V	A	H	K	Q	D	Y	Y	R	L	L	L	N	V	T	T	Q	Q	E	W	Q	P	W	I	I	F	I	L	N	A	V	E	Q	T	A	K	W	T	T	H	K	I	A	A	A	R	E	L	I	A	H	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S		S	S	S				T							T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	E	Y	V	R	Q	Q	L	P	K	I	Y	S	H	E	L	V	Q	V	I	F	E	Q	P	Y	C	R	I	Q	N	L	V	E	S	G	L	A	K	R	Q	T	A	S	V	Y	L	K	Q	L	C	D	I	G	V	L	E	E	V	Q	S	G	K	E	K	L	F	V	H	P	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T													S										T	T	S																T	T	S							T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Sequence	V	T	L	X	T	K	D	S	N	Q	F	S	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S