PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1u5tA_

Fold library id	PDB Header	Molecule	Title
c1u5tA_	PDB header: transport protein	Chain: A: PDB Molecule: appears to be functionally related to snf7;	PDBTitle: structure of the escrt-ii endosomal trafficking complex

Links to external resources
Added to library: Tue Mar 16 12:46:44 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V N K T I L E K Q S V E L R D Q L M V F Q E R L V E F A K K H N S E L Q A S P E F R S K F M H M C S S I G I D P L S L F D R D K H L F T V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T T T
T
T T S S G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D F Y Y E V C L K V I E I C R Q T K D M N G G V I S F Q E L E K V H F R K L N V G L D D L E K S I D M L K S L E C F E I F Q I R G K K F L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S S
T T T T T T T
T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S V P N E L T S D Q T K I L E I C S I L G Y S S I S L L K A N L G W E A V R S K S A L D E M V A N G L L W I D Y Q G G A E A L Y W D P S W I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T T T T T T S
B
S T T S S
S S S S S
G G G G

. . .

Sequence T R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	N	K	T	I	L	E	K	Q	S	V	E	L	R	D	Q	L	M	V	F	Q	E	R	L	V	E	F	A	K	K	H	N	S	E	L	Q	A	S	P	E	F	R	S	K	F	M	H	M	C	S	S	I	G	I	D	P	L	S	L	F	D	R	D	K	H	L	F	T	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																													T	T	T	T	T	T																T							T	T	S	S	G	G	G	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	F	Y	Y	E	V	C	L	K	V	I	E	I	C	R	Q	T	K	D	M	N	G	G	V	I	S	F	Q	E	L	E	K	V	H	F	R	K	L	N	V	G	L	D	D	L	E	K	S	I	D	M	L	K	S	L	E	C	F	E	I	F	Q	I	R	G	K	K	F	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	T	S	S	S										T	T	T	T	T	T	T														T	T	T									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	V	P	N	E	L	T	S	D	Q	T	K	I	L	E	I	C	S	I	L	G	Y	S	S	I	S	L	L	K	A	N	L	G	W	E	A	V	R	S	K	S	A	L	D	E	M	V	A	N	G	L	L	W	I	D	Y	Q	G	G	A	E	A	L	Y	W	D	P	S	W	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S				T	T							T	T	T	T	T	S			B												S													T	T	S	S					S	S	S	S	S						G	G	G	G
	.	.	.
Sequence	T	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G