PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3bwgA_

Fold library id	PDB Header	Molecule	Title
c3bwgA_	PDB header: transcription regulator	Chain: A: PDB Molecule: uncharacterized hth-type transcriptional	PDBTitle: the crystal structure of possible transcriptional regulator2 yydk from bacillus subtilis subsp. subtilis str. 168

Links to external resources
Added to library: Tue Mar 16 13:41:28 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q Q I A T E I E T Y I E E H Q L Q Q G D K L P V L E T L X A Q F E V S K S T I T K S L E L L E Q K G A I F Q V R G S G I F V R K H K R K G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
B
T T
T T S T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I S L L S N Q G D F N V T S K V I E L D V R K P T P E A A E N L N I G X D E D I Y Y V K R V R Y I N G Q T L C Y E E S Y Y T K S I V T Y L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S G G G
T
T T S
T T T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N E I V S H S I F H Y I R E G L G L K I G F S D L F L H V G Q L N E E E A E Y L G L E A G L P K L Y I E S I F H L T N G Q P F D Y S K I S Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T S
T S
T T S T T S

. . . . . . . . . 220 . . .

Sequence N Y E Q S Q F V V Q A N S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	Q	I	A	T	E	I	E	T	Y	I	E	E	H	Q	L	Q	Q	G	D	K	L	P	V	L	E	T	L	X	A	Q	F	E	V	S	K	S	T	I	T	K	S	L	E	L	L	E	Q	K	G	A	I	F	Q	V	R	G	S	G	I	F	V	R	K	H	K	R	K	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T			T	T		B											T	T																T	T	S					T	T	T											S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	S	L	L	S	N	Q	G	D	F	N	V	T	S	K	V	I	E	L	D	V	R	K	P	T	P	E	A	A	E	N	L	N	I	G	X	D	E	D	I	Y	Y	V	K	R	V	R	Y	I	N	G	Q	T	L	C	Y	E	E	S	Y	Y	T	K	S	I	V	T	Y	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	G	G	G																										T			T	T	S												T	T												T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	E	I	V	S	H	S	I	F	H	Y	I	R	E	G	L	G	L	K	I	G	F	S	D	L	F	L	H	V	G	Q	L	N	E	E	E	A	E	Y	L	G	L	E	A	G	L	P	K	L	Y	I	E	S	I	F	H	L	T	N	G	Q	P	F	D	Y	S	K	I	S	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	S									T	S																									T	S		T	T	S												T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	N	Y	E	Q	S	Q	F	V	V	Q	A	N	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T