Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	I	G	V	A	G	L	Q	R	E	Q	I	K	K	T	I	E	A	T	A	P	G	C	F	E	V	F	I	H	N	D	M	E	A	A	M	K	V	K	S	G	Q	L	D	Y	Y	I	G	A	C	N	T	G	A	G	A	A	L
Secondary structure
SS confidence
Disorder		?	?					?																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Sequence		S	I	A	I	A	V	I	G	Y	N	K	S	C	T	I	A	K	P	G	I	K	A	K	D	E	H	I	A	K	M	I	A	E	G	K	V	A	F	G	L	S	V	E	H	V	E	H	A	I	P	M	L	I	N	H	L	K
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?	?	?																																	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3s5p chain A Region: 2 - 61 Aligned: 60 Modelled: 60 Confidence: 90.4% Identity: 23% PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia Phyre2 PDB 1nn4 chain A Region: 1 - 61 Aligned: 61 Modelled: 61 Confidence: 89.2% Identity: 25% Fold: Ribose/Galactose isomerase RpiB/AlsB Superfamily: Ribose/Galactose isomerase RpiB/AlsB Family: Ribose/Galactose isomerase RpiB/AlsB Phyre2 PDB 3he8 chain A Region: 2 - 61 Aligned: 60 Modelled: 60 Confidence: 87.6% Identity: 32% PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b Phyre2 PDB 2vvp chain A domain 1 Region: 2 - 61 Aligned: 60 Modelled: 60 Confidence: 83.9% Identity: 15% Fold: Ribose/Galactose isomerase RpiB/AlsB Superfamily: Ribose/Galactose isomerase RpiB/AlsB Family: Ribose/Galactose isomerase RpiB/AlsB Phyre2 PDB 1o1x chain A Region: 2 - 61 Aligned: 59 Modelled: 56 Confidence: 82.2% Identity: 22% Fold: Ribose/Galactose isomerase RpiB/AlsB Superfamily: Ribose/Galactose isomerase RpiB/AlsB Family: Ribose/Galactose isomerase RpiB/AlsB Phyre2 PDB 2af4 chain C domain 1 Region: 4 - 68 Aligned: 63 Modelled: 65 Confidence: 80.9% Identity: 25% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Phosphotransacetylase Phyre2 PDB 3qd5 chain B Region: 2 - 61 Aligned: 59 Modelled: 60 Confidence: 78.1% Identity: 25% PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr Phyre2 PDB 3m1p chain A Region: 2 - 61 Aligned: 60 Modelled: 60 Confidence: 77.3% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate Phyre2 PDB 3k7p chain A Region: 11 - 61 Aligned: 51 Modelled: 51 Confidence: 76.4% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. Phyre2 PDB 2ppw chain A Region: 11 - 61 Aligned: 51 Modelled: 48 Confidence: 68.9% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae Phyre2 PDB 3c5y chain D Region: 2 - 61 Aligned: 59 Modelled: 53 Confidence: 67.5% Identity: 24% PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution Phyre2 PDB 1u5w chain A domain 1 Region: 1 - 50 Aligned: 50 Modelled: 50 Confidence: 64.8% Identity: 14% Fold: Anticodon-binding domain-like Superfamily: ITPase-like Family: YjjX-like Phyre2 PDB 3ono chain A Region: 34 - 61 Aligned: 28 Modelled: 24 Confidence: 58.6% Identity: 32% PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus Phyre2 PDB 3s81 chain A Region: 1 - 54 Aligned: 54 Modelled: 53 Confidence: 58.5% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:putative aspartate racemase; PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium Phyre2 PDB 2j85 chain A domain 1 Region: 79 - 98 Aligned: 20 Modelled: 20 Confidence: 57.1% Identity: 30% Fold: STIV B116-like Superfamily: STIV B116-like Family: STIV B116-like Phyre2 PDB 1r5j chain A Region: 10 - 69 Aligned: 60 Modelled: 60 Confidence: 53.4% Identity: 25% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Phosphotransacetylase Phyre2 PDB 1yco chain A Region: 1 - 56 Aligned: 56 Modelled: 56 Confidence: 49.2% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:branched-chain phosphotransacylase; PDBTitle: crystal structure of a branched-chain phosphotransacylase from2 enterococcus faecalis v583 Phyre2 PDB 1vmi chain A Region: 4 - 77 Aligned: 72 Modelled: 74 Confidence: 48.3% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:putative phosphate acetyltransferase; PDBTitle: crystal structure of putative phosphate acetyltransferase2 (np_416953.1) from escherichia coli k12 at 2.32 a resolution Phyre2 PDB 1vmi chain A Region: 4 - 77 Aligned: 72 Modelled: 74 Confidence: 48.3% Identity: 21% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Phosphotransacetylase Phyre2 PDB 1nsj chain A Region: 1 - 33 Aligned: 33 Modelled: 33 Confidence: 46.5% Identity: 6% Fold: TIM beta/alpha-barrel Superfamily: Ribulose-phoshate binding barrel Family: Tryptophan biosynthesis enzymes Phyre2 1 c3s5pA_ 2 d1nn4a_ 3 c3he8A_ 4 d2vvpa1 5 d1o1xa_ 6 d2af4c1 7 c3qd5B_ 8 c3m1pA_ 9 c3k7pA_ 10 c2ppwA_ 11 c3c5yD_ 12 d1u5wa1 13 c3onoA_ 14 c3s81A_ 15 d2j85a1 16 d1r5ja_ 17 c1ycoA_ 18 c1vmiA_ 19 d1vmia_ 20 d1nsja_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3s5pA_ 90.4 23 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia 2 d1nn4a_ 89.2 25 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 3 c3he8A_ 87.6 32 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 4 d2vvpa1 83.9 15 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 5 d1o1xa_ 82.2 22 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 6 d2af4c1 80.9 25 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 7 c3qd5B_ 78.1 25 PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr 8 c3m1pA_ 77.3 15 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate 9 c3k7pA_ 76.4 18 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. 10 c2ppwA_ 68.9 22 PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae 11 c3c5yD_ 67.5 24 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 12 d1u5wa1 64.8 14 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 13 c3onoA_ 58.6 32 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 14 c3s81A_ 58.5 17 PDB header:isomerase Chain: A: PDB Molecule:putative aspartate racemase; PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium 15 d2j85a1 57.1 30 Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like 16 d1r5ja_ 53.4 25 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 17 c1ycoA_ 49.2 25 PDB header:transferase Chain: A: PDB Molecule:branched-chain phosphotransacylase; PDBTitle: crystal structure of a branched-chain phosphotransacylase from2 enterococcus faecalis v583 18 c1vmiA_ 48.3 21 PDB header:transferase Chain: A: PDB Molecule:putative phosphate acetyltransferase; PDBTitle: crystal structure of putative phosphate acetyltransferase2 (np_416953.1) from escherichia coli k12 at 2.32 a resolution 19 d1vmia_ 48.3 21 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 20 d1nsja_ 46.5 6 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 21 c3l6gA_ not modelled 44.6 16 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 22 d1zbsa2 not modelled 39.7 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 23 d1ni9a_ not modelled 38.4 11 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:GlpX-like bacterial fructose-1,6-bisphosphatase 24 d1vi1a_ not modelled 34.4 28 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PlsX-like 25 d1xcoa_ not modelled 33.8 25 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 26 d2ch5a2 not modelled 31.8 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 27 c3o66A_ not modelled 30.3 11 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter 28 c2dx7B_ not modelled 30.1 20 PDB header:isomerase Chain: B: PDB Molecule:aspartate racemase; PDBTitle: crystal structure of pyrococcus horikoshii ot3 aspartate racemase2 complex with citric acid 29 c2kzhA_ not modelled 28.3 27 PDB header:isomerase Chain: A: PDB Molecule:tryptophan biosynthesis protein trpcf; PDBTitle: three-dimensional structure of a truncated phosphoribosylanthranilate2 isomerase (residues 255-384) from escherichia coli 30 c3tngA_ not modelled 27.9 20 PDB header:transferase Chain: A: PDB Molecule:lmo1369 protein; PDBTitle: the crystal structure of a possible phosphate acetyl/butaryl2 transferase from listeria monocytogenes egd-e. 31 d2hrca1 not modelled 27.9 21 Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase 32 d1zxoa1 not modelled 27.4 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 33 d2cpwa1 not modelled 27.2 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 34 c2rejA_ not modelled 26.4 16 PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation 35 c2x4iA_ not modelled 25.1 39 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein 114; PDBTitle: orf 114a from sulfolobus islandicus rudivirus 1 36 d2gkea2 not modelled 24.6 34 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase 37 c3tmgA_ not modelled 24.3 19 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi 38 d1vg5a_ not modelled 21.0 37 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 39 d1p9qc2 not modelled 18.2 25 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein AF0491, N-terminal domain 40 c3uatA_ not modelled 17.8 20 PDB header:peptide binding protein Chain: A: PDB Molecule:disks large homolog 1; PDBTitle: guanylate kinase domains of the maguk family scaffold proteins as2 specific phospho-protein binding modules 41 d1u7na_ not modelled 17.3 44 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PlsX-like 42 c2jrlA_ not modelled 16.9 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 43 c3fveA_ not modelled 16.7 38 PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase mycobacterium2 tuberculosis dapf 44 c3b2nA_ not modelled 16.1 9 PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus 45 c2dakA_ not modelled 16.0 13 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 46 d1zwya1 not modelled 15.3 30 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 47 c3un6A_ not modelled 14.6 13 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound 48 d1vmea1 not modelled 13.8 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 49 d1o4ua1 not modelled 13.8 19 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 50 d1rypd_ not modelled 13.5 26 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 51 c2v25B_ not modelled 13.3 6 PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate 52 d1rypg_ not modelled 12.8 25 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 53 c3bdmF_ not modelled 12.8 25 PDB header:hydrolase Chain: F: PDB Molecule:proteasome component c1; PDBTitle: yeast 20s proteasome:glidobactin a-complex 54 d1j2pa_ not modelled 12.7 24 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 55 c2crnA_ not modelled 12.6 17 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 56 c2cpwA_ not modelled 12.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 57 c1b74A_ not modelled 12.1 31 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus 58 c3kzgB_ not modelled 12.1 8 PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila 59 c3chgB_ not modelled 11.7 16 PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa 60 c3c3wB_ not modelled 11.5 11 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 61 c2cokA_ not modelled 11.3 23 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1; PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1 62 c3czcA_ not modelled 10.9 16 PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans 63 c3kn3C_ not modelled 10.7 5 PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes 64 d1dz3a_ not modelled 10.6 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 65 d1irug_ not modelled 10.6 25 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 66 d1o5ha_ not modelled 10.4 15 Fold:Methenyltetrahydrofolate cyclohydrolase-like Superfamily:Methenyltetrahydrofolate cyclohydrolase-like Family:Methenyltetrahydrofolate cyclohydrolase-like 67 c3a16C_ not modelled 10.2 35 PDB header:lyase Chain: C: PDB Molecule:aldoxime dehydratase; PDBTitle: crystal structure of aldoxime dehydratase (oxdre) in complex2 with propionaldoxime 68 d1lbqa_ not modelled 9.3 19 Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase 69 c3lr1A_ not modelled 9.2 13 PDB header:transport protein Chain: A: PDB Molecule:tungstate abc transporter, periplasmic tungstate- PDBTitle: the crystal structure of the tungstate abc transporter from2 geobacter sulfurreducens 70 d1vega_ not modelled 8.9 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 71 d2d9ra1 not modelled 8.7 18 Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like 72 c3dzmB_ not modelled 8.7 60 PDB header:unknown function Chain: B: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27 73 c3s9xA_ not modelled 8.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asch domain; PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101 74 d1u14a_ not modelled 8.2 20 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like 75 d1irue_ not modelled 8.0 23 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 76 c3pamB_ not modelled 8.0 11 PDB header:transport protein Chain: B: PDB Molecule:transmembrane protein; PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1 77 d1djqa1 not modelled 7.7 19 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 78 c3b50A_ not modelled 7.7 24 PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. 79 d1hgxa_ not modelled 7.7 22 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 80 c3ir1F_ not modelled 7.6 22 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 81 c3t8yA_ not modelled 7.5 13 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 82 d1nvta1 not modelled 7.1 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 83 d1t62a_ not modelled 7.0 26 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical protein EF3133 84 c2fmoA_ not modelled 6.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate reductase; PDBTitle: ala177val mutant of e. coli methylenetetrahydrofolate2 reductase 85 c3iwpK_ not modelled 6.6 15 PDB header:metal binding protein Chain: K: PDB Molecule:copper homeostasis protein cutc homolog; PDBTitle: crystal structure of human copper homeostasis protein cutc 86 c1pzmB_ not modelled 6.6 18 PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: crystal structure of hgprt-ase from leishmania tarentolae in complex2 with gmp 87 c3pppA_ not modelled 6.6 14 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc 88 c3bboV_ not modelled 6.6 11 PDB header:ribosome Chain: V: PDB Molecule:ribosomal protein l23; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 89 d1zc6a1 not modelled 6.6 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 90 d1hw6a_ not modelled 6.5 23 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 91 c3k4uA_ not modelled 6.3 13 PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine 92 d1a4pa_ not modelled 6.3 25 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 93 c3qfnA_ not modelled 6.2 9 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate 94 d2hiya1 not modelled 6.1 14 Fold:SP0830-like Superfamily:SP0830-like Family:SP0830-like 95 d1zpsa1 not modelled 6.0 83 Fold:HisI-like Superfamily:HisI-like Family:HisI-like 96 d1irua_ not modelled 6.0 25 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 97 c1su1A_ not modelled 6.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli 98 d1su1a_ not modelled 6.0 17 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 99 d1v5xa_ not modelled 6.0 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0