PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3bdmF_

Fold library id	PDB Header	Molecule	Title
c3bdmF_	PDB header: hydrolase	Chain: F: PDB Molecule: proteasome component c1;	PDBTitle: yeast 20s proteasome:glidobactin a-complex

Links to external resources
Added to library: Tue Mar 16 12:15:17 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G T G Y D L S N S V F S P D G R N F Q V E Y A V K A V E N G T T S I G I K C N D G V V F A V E K L I T S K L L V P Q K N V K I Q V V D R H I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S T T
T T S
T S
T T
T T S
T T T S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G C V Y S G L I P D G R H L V N R G R E E A A S F K K L Y K T P I P I P A F A D R L G Q Y V Q A H T L Y N S V R P F G V S T I F G G V D K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T T S
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G A H L Y M L E P S G S Y W G Y K G A A T G K G R Q S A K A E L E K L V D H H P E G L S A R E A V K Q A A K I I Y L A H E D N K E K D F E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S T T T
T T
G G G S T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence E I S W C S L S E T N G L H K F V K G D L L Q E A I D F A Q K E I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	T	G	Y	D	L	S	N	S	V	F	S	P	D	G	R	N	F	Q	V	E	Y	A	V	K	A	V	E	N	G	T	T	S	I	G	I	K	C	N	D	G	V	V	F	A	V	E	K	L	I	T	S	K	L	L	V	P	Q	K	N	V	K	I	Q	V	V	D	R	H	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S	S	T	T				T	T	S														T	S									T	T													T	T	S		T	T	T	S							T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	C	V	Y	S	G	L	I	P	D	G	R	H	L	V	N	R	G	R	E	E	A	A	S	F	K	K	L	Y	K	T	P	I	P	I	P	A	F	A	D	R	L	G	Q	Y	V	Q	A	H	T	L	Y	N	S	V	R	P	F	G	V	S	T	I	F	G	G	V	D	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															S																		T	T	S		T	T	S				S										T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	A	H	L	Y	M	L	E	P	S	G	S	Y	W	G	Y	K	G	A	A	T	G	K	G	R	Q	S	A	K	A	E	L	E	K	L	V	D	H	H	P	E	G	L	S	A	R	E	A	V	K	Q	A	A	K	I	I	Y	L	A	H	E	D	N	K	E	K	D	F	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S						S					S	T	T														T		T	T																			G	G	G	S	T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	E	I	S	W	C	S	L	S	E	T	N	G	L	H	K	F	V	K	G	D	L	L	Q	E	A	I	D	F	A	Q	K	E	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	T	T	T	T																					T