PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3c5yD_

Fold library id	PDB Header	Molecule	Title
c3c5yD_	PDB header: structural genomics, unknown function	Chain: D: PDB Molecule: ribose/galactose isomerase;	PDBTitle: crystal structure of putative ribose 5-phosphate isomerase2 (yp_001165900.1) from novosphingobium aromaticivorans dsm3 12444 at 1.81 a resolution

Links to external resources
Added to library: Tue Mar 16 13:30:05 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G X K I A L I I E N S Q A A K N A V V H E A L T T V A E P L G H K V F N Y G X Y T A E D K A S L T Y V X N G L L A G I L L N S G A A D F V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G G G G G G T
S T T
S S
T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T G G T G X G S X L A A N A X P G V F C G L V I D P T D A F L F G Q I N D G N A I S X P Y S K G F G W A A E L N L Q D V Y R K L F D G E R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T S T T
S T
S
S S T T
T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L G Y P R E R A E I X R K N R G I L R E L K D A S C R D X L T V L K T V D Q D L L R A A I A G E K F A E L F Y P N C K D D A I A N Y L R S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G S
S
T
S T T G G G
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	X	K	I	A	L	I	I	E	N	S	Q	A	A	K	N	A	V	V	H	E	A	L	T	T	V	A	E	P	L	G	H	K	V	F	N	Y	G	X	Y	T	A	E	D	K	A	S	L	T	Y	V	X	N	G	L	L	A	G	I	L	L	N	S	G	A	A	D	F	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										G	G	G	G	G	G													G	G	G	T										S	T	T		S	S																		T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	G	G	T	G	X	G	S	X	L	A	A	N	A	X	P	G	V	F	C	G	L	V	I	D	P	T	D	A	F	L	F	G	Q	I	N	D	G	N	A	I	S	X	P	Y	S	K	G	F	G	W	A	A	E	L	N	L	Q	D	V	Y	R	K	L	F	D	G	E	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S									T	S	T	T								S											T			S						S	S	T	T			T	T														S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	G	Y	P	R	E	R	A	E	I	X	R	K	N	R	G	I	L	R	E	L	K	D	A	S	C	R	D	X	L	T	V	L	K	T	V	D	Q	D	L	L	R	A	A	I	A	G	E	K	F	A	E	L	F	Y	P	N	C	K	D	D	A	I	A	N	Y	L	R	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	G	G	G																			S										S									T		S	T	T						G	G	G												T