PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3pamB_

Fold library id	PDB Header	Molecule	Title
c3pamB_	PDB header: transport protein	Chain: B: PDB Molecule: transmembrane protein;	PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1

Links to external resources
Added to library: Sat Nov 20 09:07:30 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D I X G F V F N T R R T L F K D K R V R Q A L S I L F D F E W V N H H L F N N I Y T R T E G Y W D G S I L S S I G K P A S E E E K A L L A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S G G G S S
T T T T
S S S T T S T T
S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y P D A V L P E V X D G S W R I S K D R L N A Q K A W K L L Q E A G F T K K N N R L I A P N G L P F Q F E I X T Q S L E E E K V A L A F Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T
T T
T T
T T S
B
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N L S R L G I H A E I R T V D D S Q Y Q N R L G X F N Y D X I I G K L K N S L S P G N E Q I N R W S S A S R N L K G S F N F S G A S D P A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T
S
S S
T T
T
T T
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence D A X I T A I L D A H S Q V D F I A A V R A L D R I L I S G S Y Y I P L Y H L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	I	X	G	F	V	F	N	T	R	R	T	L	F	K	D	K	R	V	R	Q	A	L	S	I	L	F	D	F	E	W	V	N	H	H	L	F	N	N	I	Y	T	R	T	E	G	Y	W	D	G	S	I	L	S	S	I	G	K	P	A	S	E	E	E	K	A	L	L	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S	G	G	G	S	S																				T	T	T	T							S	S	S	T	T	S	T	T			S	S	S											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	P	D	A	V	L	P	E	V	X	D	G	S	W	R	I	S	K	D	R	L	N	A	Q	K	A	W	K	L	L	Q	E	A	G	F	T	K	K	N	N	R	L	I	A	P	N	G	L	P	F	Q	F	E	I	X	T	Q	S	L	E	E	E	K	V	A	L	A	F	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S	S							T																					T	T					T	T					T	T	S		B								S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	L	S	R	L	G	I	H	A	E	I	R	T	V	D	D	S	Q	Y	Q	N	R	L	G	X	F	N	Y	D	X	I	I	G	K	L	K	N	S	L	S	P	G	N	E	Q	I	N	R	W	S	S	A	S	R	N	L	K	G	S	F	N	F	S	G	A	S	D	P	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T																				T			S										S	S			T	T											T		T	T		S		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	D	A	X	I	T	A	I	L	D	A	H	S	Q	V	D	F	I	A	A	V	R	A	L	D	R	I	L	I	S	G	S	Y	Y	I	P	L	Y	H	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S																			T