Phyre 2 Results for P64631

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Email | l.a.kelley@imperial.ac.uk
Description | P64631
Date | Thu Jan 5 12:10:02 GMT 2012
Unique Job ID | 48e5f9e23eeddc0e

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c3s5pA_
Top template information
PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
Confidence and coverage
Confidence: | 90.4% | Coverage: | 51%
60 residues ( 51% of your sequence) have been modelled with 90.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | K | I | G | V | A | G | L | Q | R | E | Q | I | K | K | T | I | E | A | T | A | P | G | C | F | E | V | F | I | H | N | D | M | E | A | A | M | K | V | K | S | G | Q | L | D | Y | Y | I | G | A | C | N | T | G | A | G | A | A | L
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Disorder |  | ? | ? |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | .
Sequence |  | S | I | A | I | A | V | I | G | Y | N | K | S | C | T | I | A | K | P | G | I | K | A | K | D | E | H | I | A | K | M | I | A | E | G | K | V | A | F | G | L | S | V | E | H | V | E | H | A | I | P | M | L | I | N | H | L | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3s5pA_ |

### PDB 3s5p chain A

Region: 2 - 61
Aligned: 60
Modelled: 60
Confidence: 90.4%
Identity: 23%
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia

Phyre2
2 |
| d1nn4a_ |

### PDB 1nn4 chain A

Region: 1 - 61
Aligned: 61
Modelled: 61
Confidence: 89.2%
Identity: 25%
Fold: Ribose/Galactose isomerase RpiB/AlsB
Superfamily: Ribose/Galactose isomerase RpiB/AlsB
Family: Ribose/Galactose isomerase RpiB/AlsB

Phyre2
3 |
| c3he8A_ |

### PDB 3he8 chain A

Region: 2 - 61
Aligned: 60
Modelled: 60
Confidence: 87.6%
Identity: 32%
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b

Phyre2
4 |
| d2vvpa1 |

### PDB 2vvp chain A domain 1

Region: 2 - 61
Aligned: 60
Modelled: 60
Confidence: 83.9%
Identity: 15%
Fold: Ribose/Galactose isomerase RpiB/AlsB
Superfamily: Ribose/Galactose isomerase RpiB/AlsB
Family: Ribose/Galactose isomerase RpiB/AlsB

Phyre2
5 |
| d1o1xa_ |

### PDB 1o1x chain A

Region: 2 - 61
Aligned: 59
Modelled: 56
Confidence: 82.2%
Identity: 22%
Fold: Ribose/Galactose isomerase RpiB/AlsB
Superfamily: Ribose/Galactose isomerase RpiB/AlsB
Family: Ribose/Galactose isomerase RpiB/AlsB

Phyre2
6 |
| d2af4c1 |

### PDB 2af4 chain C domain 1

Region: 4 - 68
Aligned: 63
Modelled: 65
Confidence: 80.9%
Identity: 25%
Fold: Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
Family: Phosphotransacetylase

Phyre2
7 |
| c3qd5B_ |

### PDB 3qd5 chain B

Region: 2 - 61
Aligned: 59
Modelled: 60
Confidence: 78.1%
Identity: 25%
PDB header:isomerase
Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase;
PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr

Phyre2
8 |
| c3m1pA_ |

### PDB 3m1p chain A

Region: 2 - 61
Aligned: 60
Modelled: 60
Confidence: 77.3%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate

Phyre2
9 |
| c3k7pA_ |

### PDB 3k7p chain A

Region: 11 - 61
Aligned: 51
Modelled: 51
Confidence: 76.4%
Identity: 18%
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.

Phyre2
10 |
| c2ppwA_ |

### PDB 2ppw chain A

Region: 11 - 61
Aligned: 51
Modelled: 48
Confidence: 68.9%
Identity: 22%
PDB header:isomerase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae

Phyre2
11 |
| c3c5yD_ |

### PDB 3c5y chain D

Region: 2 - 61
Aligned: 59
Modelled: 53
Confidence: 67.5%
Identity: 24%
PDB header:isomerase
Chain: D: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution

Phyre2
12 |
| d1u5wa1 |

### PDB 1u5w chain A domain 1

Region: 1 - 50
Aligned: 50
Modelled: 50
Confidence: 64.8%
Identity: 14%
Fold: Anticodon-binding domain-like
Superfamily: ITPase-like
Family: YjjX-like

Phyre2
13 |
| c3onoA_ |

### PDB 3ono chain A

Region: 34 - 61
Aligned: 28
Modelled: 24
Confidence: 58.6%
Identity: 32%
PDB header:isomerase
Chain: A: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus

Phyre2
14 |
| c3s81A_ |

### PDB 3s81 chain A

Region: 1 - 54
Aligned: 54
Modelled: 53
Confidence: 58.5%
Identity: 17%
PDB header:isomerase
Chain: A: PDB Molecule:putative aspartate racemase;
PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium

Phyre2
15 |
| d2j85a1 |

### PDB 2j85 chain A domain 1

Region: 79 - 98
Aligned: 20
Modelled: 20
Confidence: 57.1%
Identity: 30%
Fold: STIV B116-like
Superfamily: STIV B116-like
Family: STIV B116-like

Phyre2
16 |
| d1r5ja_ |

### PDB 1r5j chain A

Region: 10 - 69
Aligned: 60
Modelled: 60
Confidence: 53.4%
Identity: 25%
Fold: Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
Family: Phosphotransacetylase

Phyre2
17 |
| c1ycoA_ |

### PDB 1yco chain A

Region: 1 - 56
Aligned: 56
Modelled: 56
Confidence: 49.2%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:branched-chain phosphotransacylase;
PDBTitle: crystal structure of a branched-chain phosphotransacylase from2 enterococcus faecalis v583

Phyre2
18 |
| c1vmiA_ |

### PDB 1vmi chain A

Region: 4 - 77
Aligned: 72
Modelled: 74
Confidence: 48.3%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:putative phosphate acetyltransferase;
PDBTitle: crystal structure of putative phosphate acetyltransferase2 (np_416953.1) from escherichia coli k12 at 2.32 a resolution

Phyre2
19 |
| d1vmia_ |

### PDB 1vmi chain A

Region: 4 - 77
Aligned: 72
Modelled: 74
Confidence: 48.3%
Identity: 21%
Fold: Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
Family: Phosphotransacetylase

Phyre2
20 |
| d1nsja_ |

### PDB 1nsj chain A

Region: 1 - 33
Aligned: 33
Modelled: 33
Confidence: 46.5%
Identity: 6%
Fold: TIM beta/alpha-barrel
Superfamily: Ribulose-phoshate binding barrel
Family: Tryptophan biosynthesis enzymes

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3s5pA_ |
|  | 90.4 | 23 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
2 | d1nn4a_ |
|  | 89.2 | 25 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
3 | c3he8A_ |
|  | 87.6 | 32 | PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
4 | d2vvpa1 |
|  | 83.9 | 15 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
5 | d1o1xa_ |
|  | 82.2 | 22 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
6 | d2af4c1 |
|  | 80.9 | 25 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase
7 | c3qd5B_ |
|  | 78.1 | 25 | PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr
8 | c3m1pA_ |
|  | 77.3 | 15 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
9 | c3k7pA_ |
|  | 76.4 | 18 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
10 | c2ppwA_ |
|  | 68.9 | 22 | PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
11 | c3c5yD_ |
|  | 67.5 | 24 | PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
12 | d1u5wa1 |
|  | 64.8 | 14 | Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like
13 | c3onoA_ |
|  | 58.6 | 32 | PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
14 | c3s81A_ |
|  | 58.5 | 17 | PDB header:isomerase Chain: A: PDB Molecule:putative aspartate racemase; PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium
15 | d2j85a1 |
|  | 57.1 | 30 | Fold:STIV B116-like Superfamily:STIV B116-like Family:STIV B116-like
16 | d1r5ja_ |
|  | 53.4 | 25 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase
17 | c1ycoA_ |
|  | 49.2 | 25 | PDB header:transferase Chain: A: PDB Molecule:branched-chain phosphotransacylase; PDBTitle: crystal structure of a branched-chain phosphotransacylase from2 enterococcus faecalis v583
18 | c1vmiA_ |
|  | 48.3 | 21 | PDB header:transferase Chain: A: PDB Molecule:putative phosphate acetyltransferase; PDBTitle: crystal structure of putative phosphate acetyltransferase2 (np_416953.1) from escherichia coli k12 at 2.32 a resolution
19 | d1vmia_ |
|  | 48.3 | 21 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase
20 | d1nsja_ |
|  | 46.5 | 6 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
21 | c3l6gA_ |
| not modelled | 44.6 | 16 | PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation
22 | d1zbsa2 |
| not modelled | 39.7 | 14 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like
23 | d1ni9a_ |
| not modelled | 38.4 | 11 | Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:GlpX-like bacterial fructose-1,6-bisphosphatase
24 | d1vi1a_ |
| not modelled | 34.4 | 28 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PlsX-like
25 | d1xcoa_ |
| not modelled | 33.8 | 25 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase
26 | d2ch5a2 |
| not modelled | 31.8 | 10 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like
27 | c3o66A_ |
| not modelled | 30.3 | 11 | PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter
28 | c2dx7B_ |
| not modelled | 30.1 | 20 | PDB header:isomerase Chain: B: PDB Molecule:aspartate racemase; PDBTitle: crystal structure of pyrococcus horikoshii ot3 aspartate racemase2 complex with citric acid
29 | c2kzhA_ |
| not modelled | 28.3 | 27 | PDB header:isomerase Chain: A: PDB Molecule:tryptophan biosynthesis protein trpcf; PDBTitle: three-dimensional structure of a truncated phosphoribosylanthranilate2 isomerase (residues 255-384) from escherichia coli
30 | c3tngA_ |
| not modelled | 27.9 | 20 | PDB header:transferase Chain: A: PDB Molecule:lmo1369 protein; PDBTitle: the crystal structure of a possible phosphate acetyl/butaryl2 transferase from listeria monocytogenes egd-e.
31 | d2hrca1 |
| not modelled | 27.9 | 21 | Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase
32 | d1zxoa1 |
| not modelled | 27.4 | 18 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like
33 | d2cpwa1 |
| not modelled | 27.2 | 13 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
34 | c2rejA_ |
| not modelled | 26.4 | 16 | PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation
35 | c2x4iA_ |
| not modelled | 25.1 | 39 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein 114; PDBTitle: orf 114a from sulfolobus islandicus rudivirus 1
36 | d2gkea2 |
| not modelled | 24.6 | 34 | Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase
37 | c3tmgA_ |
| not modelled | 24.3 | 19 | PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi
38 | d1vg5a_ |
| not modelled | 21.0 | 37 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
39 | d1p9qc2 |
| not modelled | 18.2 | 25 | Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein AF0491, N-terminal domain
40 | c3uatA_ |
| not modelled | 17.8 | 20 | PDB header:peptide binding protein Chain: A: PDB Molecule:disks large homolog 1; PDBTitle: guanylate kinase domains of the maguk family scaffold proteins as2 specific phospho-protein binding modules
41 | d1u7na_ |
| not modelled | 17.3 | 44 | Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PlsX-like
42 | c2jrlA_ |
| not modelled | 16.9 | 14 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
43 | c3fveA_ |
| not modelled | 16.7 | 38 | PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase mycobacterium2 tuberculosis dapf
44 | c3b2nA_ |
| not modelled | 16.1 | 9 | PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
45 | c2dakA_ |
| not modelled | 16.0 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5)
46 | d1zwya1 |
| not modelled | 15.3 | 30 | Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like
47 | c3un6A_ |
| not modelled | 14.6 | 13 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound
48 | d1vmea1 |
| not modelled | 13.8 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
49 | d1o4ua1 |
| not modelled | 13.8 | 19 | Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like
50 | d1rypd_ |
| not modelled | 13.5 | 26 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits
51 | c2v25B_ |
| not modelled | 13.3 | 6 | PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate
52 | d1rypg_ |
| not modelled | 12.8 | 25 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits
53 | c3bdmF_ |
| not modelled | 12.8 | 25 | PDB header:hydrolase Chain: F: PDB Molecule:proteasome component c1; PDBTitle: yeast 20s proteasome:glidobactin a-complex
54 | d1j2pa_ |
| not modelled | 12.7 | 24 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits
55 | c2crnA_ |
| not modelled | 12.6 | 17 | PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein
56 | c2cpwA_ |
| not modelled | 12.2 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna
57 | c1b74A_ |
| not modelled | 12.1 | 31 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus
58 | c3kzgB_ |
| not modelled | 12.1 | 8 | PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila
59 | c3chgB_ |
| not modelled | 11.7 | 16 | PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa
60 | c3c3wB_ |
| not modelled | 11.5 | 11 | PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
61 | c2cokA_ |
| not modelled | 11.3 | 23 | PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1; PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1
62 | c3czcA_ |
| not modelled | 10.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
63 | c3kn3C_ |
| not modelled | 10.7 | 5 | PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes
64 | d1dz3a_ |
| not modelled | 10.6 | 10 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
65 | d1irug_ |
| not modelled | 10.6 | 25 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits
66 | d1o5ha_ |
| not modelled | 10.4 | 15 | Fold:Methenyltetrahydrofolate cyclohydrolase-like Superfamily:Methenyltetrahydrofolate cyclohydrolase-like Family:Methenyltetrahydrofolate cyclohydrolase-like
67 | c3a16C_ |
| not modelled | 10.2 | 35 | PDB header:lyase Chain: C: PDB Molecule:aldoxime dehydratase; PDBTitle: crystal structure of aldoxime dehydratase (oxdre) in complex2 with propionaldoxime
68 | d1lbqa_ |
| not modelled | 9.3 | 19 | Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase
69 | c3lr1A_ |
| not modelled | 9.2 | 13 | PDB header:transport protein Chain: A: PDB Molecule:tungstate abc transporter, periplasmic tungstate- PDBTitle: the crystal structure of the tungstate abc transporter from2 geobacter sulfurreducens
70 | d1vega_ |
| not modelled | 8.9 | 20 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
71 | d2d9ra1 |
| not modelled | 8.7 | 18 | Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like
72 | c3dzmB_ |
| not modelled | 8.7 | 60 | PDB header:unknown function Chain: B: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27
73 | c3s9xA_ |
| not modelled | 8.4 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asch domain; PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101
74 | d1u14a_ |
| not modelled | 8.2 | 20 | Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:YjjX-like
75 | d1irue_ |
| not modelled | 8.0 | 23 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits
76 | c3pamB_ |
| not modelled | 8.0 | 11 | PDB header:transport protein Chain: B: PDB Molecule:transmembrane protein; PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1
77 | d1djqa1 |
| not modelled | 7.7 | 19 | Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases
78 | c3b50A_ |
| not modelled | 7.7 | 24 | PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac.
79 | d1hgxa_ |
| not modelled | 7.7 | 22 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
80 | c3ir1F_ |
| not modelled | 7.6 | 22 | PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis
81 | c3t8yA_ |
| not modelled | 7.5 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
82 | d1nvta1 |
| not modelled | 7.1 | 24 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
83 | d1t62a_ |
| not modelled | 7.0 | 26 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical protein EF3133
84 | c2fmoA_ |
| not modelled | 6.8 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate reductase; PDBTitle: ala177val mutant of e. coli methylenetetrahydrofolate2 reductase
85 | c3iwpK_ |
| not modelled | 6.6 | 15 | PDB header:metal binding protein Chain: K: PDB Molecule:copper homeostasis protein cutc homolog; PDBTitle: crystal structure of human copper homeostasis protein cutc
86 | c1pzmB_ |
| not modelled | 6.6 | 18 | PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: crystal structure of hgprt-ase from leishmania tarentolae in complex2 with gmp
87 | c3pppA_ |
| not modelled | 6.6 | 14 | PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
88 | c3bboV_ |
| not modelled | 6.6 | 11 | PDB header:ribosome Chain: V: PDB Molecule:ribosomal protein l23; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome
89 | d1zc6a1 |
| not modelled | 6.6 | 22 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like
90 | d1hw6a_ |
| not modelled | 6.5 | 23 | Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP)
91 | c3k4uA_ |
| not modelled | 6.3 | 13 | PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine
92 | d1a4pa_ |
| not modelled | 6.3 | 25 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
93 | c3qfnA_ |
| not modelled | 6.2 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate
94 | d2hiya1 |
| not modelled | 6.1 | 14 | Fold:SP0830-like Superfamily:SP0830-like Family:SP0830-like
95 | d1zpsa1 |
| not modelled | 6.0 | 83 | Fold:HisI-like Superfamily:HisI-like Family:HisI-like
96 | d1irua_ |
| not modelled | 6.0 | 25 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits
97 | c1su1A_ |
| not modelled | 6.0 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli
98 | d1su1a_ |
| not modelled | 6.0 | 17 | Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like
99 | d1v5xa_ |
| not modelled | 6.0 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0