17/01/2012 17:14:52 : INFO  : Run start: Tue Jan 17 17:14:51 GMT 2012
17/01/2012 17:14:57 : INFO  : Initialised job
17/01/2012 17:15:00 : INFO  : Renaming log file 'phyre2_20120117_171450.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/48e5f9e23eeddc0e/phyre_20120117_171450.log'
17/01/2012 17:15:01 : INFO  : Initialised job:
Sequence
>batch____
MKKIGVAGLQREQIKKTIEATAPGCFEVFIHNDMEAAMKVKSGQLDYYIGACNTGAGAAL
SIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSVEHVEHAIPMLINHLK

17/01/2012 17:15:02 : INFO  : Checked sequence
17/01/2012 17:15:06 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 17:15:07 : INFO  : PSI-BLAST 3 iterations
17/01/2012 17:15:39 : INFO  : PSI-BLAST 5 iterations
17/01/2012 17:16:09 : INFO  : Finished PSI-BLAST
17/01/2012 17:16:11 : INFO  : Running Buildali to generate a3m file
17/01/2012 17:17:34 : INFO  : Converting to HMM
17/01/2012 17:17:35 : INFO  : Calibrating HMM
17/01/2012 17:17:45 : INFO  : Searching HMM database
17/01/2012 17:20:56 : INFO  : Finished buildali
17/01/2012 17:20:58 : INFO  : Predicting secondary structure
17/01/2012 17:21:07 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 17:21:09 : INFO  : Predicting Disordered regions
17/01/2012 17:21:13 : INFO  : Predicted Disorder (Disopred)
17/01/2012 17:21:14 : INFO  : Running memsat_svm check
17/01/2012 17:23:27 : INFO  : Running memsat_svm full
17/01/2012 17:28:48 : INFO  : Predicted Transmembrane (memsat_svm) ID '48e5f9e23eeddc0e'
17/01/2012 17:28:50 : INFO  : Initialising fold library search
17/01/2012 17:28:53 : INFO  : Initialised search input
17/01/2012 17:28:55 : INFO  : Building Ensemble models
17/01/2012 17:28:59 : INFO  : Building hh.c3s5pA_.model.1.pdb
17/01/2012 17:29:14 : INFO  : Building hh.d1nn4a_.model.2.pdb
17/01/2012 17:29:27 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/48e5f9e23eeddc0e/hh.d1nn4a_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/48e5f9e23eeddc0e/d1nn4a_.2.pdb
17/01/2012 17:29:31 : INFO  : Building hh.c3he8A_.model.3.pdb
17/01/2012 17:29:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/48e5f9e23eeddc0e/hh.c3he8A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/48e5f9e23eeddc0e/c3he8A_.3.pdb
17/01/2012 17:29:47 : INFO  : Building hh.d2j85a1.model.4.pdb
17/01/2012 17:29:59 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/48e5f9e23eeddc0e/hh.d2j85a1.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/48e5f9e23eeddc0e/d2j85a1.15.pdb
17/01/2012 17:30:03 : INFO  : Building c3s5pA_.1.pdb
17/01/2012 17:30:18 : INFO  : Building d1nn4a_.2.pdb
17/01/2012 17:30:34 : INFO  : Building c3he8A_.3.pdb
17/01/2012 17:30:48 : INFO  : Building d2vvpa1.4.pdb
17/01/2012 17:31:03 : INFO  : Building d1o1xa_.5.pdb
17/01/2012 17:31:17 : INFO  : Building d2af4c1.6.pdb
17/01/2012 17:31:32 : INFO  : Building c3qd5B_.7.pdb
17/01/2012 17:31:46 : INFO  : Building c3m1pA_.8.pdb
17/01/2012 17:32:01 : INFO  : Building c3k7pA_.9.pdb
17/01/2012 17:32:15 : INFO  : Building c2ppwA_.10.pdb
17/01/2012 17:32:30 : INFO  : Building c3c5yD_.11.pdb
17/01/2012 17:32:45 : INFO  : Building d1u5wa1.12.pdb
17/01/2012 17:32:59 : INFO  : Building c3onoA_.13.pdb
17/01/2012 17:33:13 : INFO  : Building c3s81A_.14.pdb
17/01/2012 17:33:27 : INFO  : Building d2j85a1.15.pdb
17/01/2012 17:33:42 : INFO  : Building d1r5ja_.16.pdb
17/01/2012 17:33:57 : INFO  : Building c1ycoA_.17.pdb
17/01/2012 17:34:12 : INFO  : Building c1vmiA_.18.pdb
17/01/2012 17:34:27 : INFO  : Building d1vmia_.19.pdb
17/01/2012 17:34:42 : INFO  : Building d1nsja_.20.pdb
17/01/2012 17:35:58 : INFO  : Finished HH model building
17/01/2012 17:36:00 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 17:36:59 : INFO  : html domain output complete ID '48e5f9e23eeddc0e'
17/01/2012 17:49:29 : INFO  : Run end  : Tue Jan 17 17:49:28 GMT 2012
