Email l.a.kelley@imperial.ac.uk Description P15042 Date Thu Jan 5 11:34:23 GMT 2012 Unique Job ID 1a930323ea46bc05

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2owoA_ 100.0 100 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 2 c1v9pB_ 100.0 46 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 3 c1dgsB_ 100.0 45 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 4 c3pn1A_ 100.0 62 PDB header:ligase/ligase inhibitor Chain: A: PDB Molecule:dna ligase; PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo 5 d1ta8a_ 100.0 47 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 6 c3jslA_ 100.0 45 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus 7 d1b04a_ 100.0 50 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 8 d1v9pa3 100.0 48 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 9 c1zauA_ 100.0 45 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: adenylation domain of nad+ dependent dna ligase from2 m.tuberculosis 10 d1dgsa3 100.0 46 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 11 c3bacA_ 100.0 62 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: structural basis for the inhibition of bacterial nad+2 dependent dna ligase 12 d1dgsa1 100.0 40 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 13 d1dgsa2 100.0 50 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 14 d1x9na3 99.7 18 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:ATP-dependent DNA ligase catalytic domain 15 c2ebuA_ 99.7 38 PDB header:replication Chain: A: PDB Molecule:replication factor c subunit 1; PDBTitle: solution structure of the brct domain from human2 replication factor c large subunit 1 16 d1l7ba_ 99.6 48 Fold:BRCT domain Superfamily:BRCT domain Family:DNA ligase 17 c2cokA_ 99.3 24 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1; PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1 18 d2a1jb1 99.2 30 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 19 c3gdeA_ 99.2 23 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: the closed conformation of atp-dependent dna ligase from2 archaeoglobus fulgidus 20 c2hivA_ 99.2 19 PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from s. solfataricus 21 c3l2pA_ not modelled 99.0 17 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase 3; PDBTitle: human dna ligase iii recognizes dna ends by dynamic switching between2 two dna bound states 22 d1x2ia1 not modelled 99.0 27 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 23 d2bgwa1 not modelled 98.9 29 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 24 c2cfmA_ not modelled 98.9 20 PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from pyrococcus furiosus 25 c2vugB_ not modelled 98.9 19 PDB header:ligase Chain: B: PDB Molecule:pab1020; PDBTitle: the structure of an archaeal homodimeric rna ligase 26 c1x9nA_ not modelled 98.8 19 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase i; PDBTitle: crystal structure of human dna ligase i bound to 5'-adenylated, nicked2 dna 27 c2d8mA_ not modelled 98.7 24 PDB header:dna binding protein Chain: A: PDB Molecule:dna-repair protein xrcc1; PDBTitle: solution structure of the first brct domain of dna-repair2 protein xrcc1 28 c1kftA_ not modelled 98.6 32 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 29 d1kfta_ not modelled 98.6 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 30 c3ef0A_ not modelled 98.6 21 PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd2 phosphatase 31 c3qwuA_ not modelled 98.5 18 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: putative atp-dependent dna ligase from aquifex aeolicus. 32 c3l3eA_ not modelled 98.5 19 PDB header:cell cycle Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1; PDBTitle: crystal structure of the sixth brct domain of human topbp1 33 c2xnkA_ not modelled 98.5 17 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1; PDBTitle: structure and function of the rad9-binding region of the dna damage2 checkpoint adaptor topbp1 34 d1fvia2 not modelled 98.4 16 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:ATP-dependent DNA ligase catalytic domain 35 c1p8lA_ not modelled 98.4 15 PDB header:ligase Chain: A: PDB Molecule:pbcv-1 dna ligase; PDBTitle: new crystal structure of chlorella virus dna ligase-adenylate 36 c2couA_ not modelled 98.4 11 PDB header:cell cycle Chain: A: PDB Molecule:ect2 protein; PDBTitle: solution structure of the second brct domain of epithelial2 cell transforming 2 37 c2nrzB_ not modelled 98.4 27 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 38 c3ef1A_ not modelled 98.3 23 PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd2 phosphatase 39 c3c1zA_ not modelled 98.3 25 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 40 d1cdza_ not modelled 98.3 14 Fold:BRCT domain Superfamily:BRCT domain Family:DNA-repair protein XRCC1 41 c2e2wA_ not modelled 98.3 17 PDB header:ligase Chain: A: PDB Molecule:dna ligase 4; PDBTitle: solution structure of the first brct domain of human dna2 ligase iv 42 d1wf6a_ not modelled 98.2 14 Fold:BRCT domain Superfamily:BRCT domain Family:DNA topoisomerase II binding protein 1, TopBP1 43 c3ktfB_ not modelled 98.2 19 PDB header:cell cycle Chain: B: PDB Molecule:microcephalin; PDBTitle: structure of the n-terminal brct domain of human2 microcephalin (mcph1). 44 c2bhnD_ not modelled 98.2 26 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 45 c3ii6Y_ not modelled 98.1 19 PDB header:ligase/dna binding protein Chain: Y: PDB Molecule:dna ligase 4; PDBTitle: structure of human xrcc4 in complex with the tandem brct2 domains of dna ligaseiv. 46 d1kzyc1 not modelled 98.1 14 Fold:BRCT domain Superfamily:BRCT domain Family:53BP1 47 d2i1qa1 not modelled 98.1 18 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 48 d2aq0a1 not modelled 98.1 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 49 d1t15a2 not modelled 98.0 21 Fold:BRCT domain Superfamily:BRCT domain Family:BRCT domain 50 c1a0iA_ not modelled 98.0 16 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: atp-dependent dna ligase from bacteriophage t7 complex with2 atp 51 d1a0ia2 not modelled 98.0 16 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:ATP-dependent DNA ligase catalytic domain 52 c1vs0A_ not modelled 98.0 18 PDB header:ligase Chain: A: PDB Molecule:putative dna ligase-like protein rv0938/mt0965; PDBTitle: crystal structure of the ligase domain from m. tuberculosis ligd at2 2.4a 53 c1kzyD_ not modelled 97.9 14 PDB header:dna binding protein, protein binding Chain: D: PDB Molecule:tumor suppressor p53-binding protein 1; PDBTitle: crystal structure of the 53bp1 brct region complexed to2 tumor suppressor p53 54 c2ebwA_ not modelled 97.9 19 PDB header:transferase Chain: A: PDB Molecule:dna repair protein rev1; PDBTitle: solution structure of the brct domain from human dna repair2 protein rev1 55 d1pzna1 not modelled 97.9 32 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 56 c2vxcA_ not modelled 97.8 15 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9; PDBTitle: structure of the crb2-brct2 domain complex with2 phosphopeptide. 57 d1l0ba1 not modelled 97.8 13 Fold:BRCT domain Superfamily:BRCT domain Family:BRCT domain 58 c3l40A_ not modelled 97.7 19 PDB header:cell cycle Chain: A: PDB Molecule:brct-containing protein 1; PDBTitle: crystal structure of s. pombe brc1 brct5-brct6 domains 59 d1szpa1 not modelled 97.7 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 60 c2r1zB_ not modelled 97.6 19 PDB header:antitumor protein Chain: B: PDB Molecule:brca1-associated ring domain protein 1; PDBTitle: crystal structure of the bard1 brct repeat 61 c3al3A_ not modelled 97.6 18 PDB header:dna binding protein/protein binding Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1; PDBTitle: crystal structure of topbp1 brct7/8-bach1 peptide complex 62 c1b22A_ not modelled 97.5 15 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 63 d1b22a_ not modelled 97.5 15 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 64 c1y98A_ not modelled 97.5 12 PDB header:antitumor protein Chain: A: PDB Molecule:breast cancer type 1 susceptibility protein; PDBTitle: structure of the brct repeats of brca1 bound to a ctip2 phosphopeptide. 65 c1l0bA_ not modelled 97.4 13 PDB header:unknown function Chain: A: PDB Molecule:brca1; PDBTitle: crystal structure of rat brca1 tandem-brct region 66 c2azmB_ not modelled 97.4 11 PDB header:cell cycle Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1; PDBTitle: crystal structure of the mdc1 brct repeat in complex with2 the histone tail of gamma-h2ax 67 d1t15a1 not modelled 97.4 12 Fold:BRCT domain Superfamily:BRCT domain Family:BRCT domain 68 c1ixrA_ not modelled 97.3 16 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 69 c2coeA_ not modelled 97.2 16 PDB header:transferase Chain: A: PDB Molecule:deoxynucleotidyltransferase, terminal variant; PDBTitle: solution structure of brct domain of terminal2 deoxynucleotidyltransferase 70 c1z56C_ not modelled 97.2 16 PDB header:ligase Chain: C: PDB Molecule:dna ligase iv; PDBTitle: co-crystal structure of lif1p-lig4p 71 c2w9mB_ not modelled 97.1 24 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 72 c1hjpA_ not modelled 97.1 21 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 73 c3kyhC_ not modelled 97.1 16 PDB header:protein binding Chain: C: PDB Molecule:mrna-capping enzyme subunit alpha; PDBTitle: saccharomyces cerevisiae cet1-ceg1 capping apparatus 74 c3s24F_ not modelled 97.0 16 PDB header:hydrolase, transferase Chain: F: PDB Molecule:mrna-capping enzyme; PDBTitle: crystal structure of human mrna guanylyltransferase 75 d1ckma2 not modelled 97.0 16 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:mRNA capping enzyme 76 c2ihmA_ not modelled 97.0 22 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 77 c2jw5A_ not modelled 97.0 13 PDB header:protein binding Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: polymerase lambda brct domain 78 d1szpb1 not modelled 96.9 16 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 79 c3t1nA_ not modelled 96.9 19 PDB header:cell cycle/peptide Chain: A: PDB Molecule:microcephalin; PDBTitle: structure of human microcephalin (mcph1) tandem brct domains in2 complex with a cdc27 phosphopeptide 80 c2h5xA_ not modelled 96.9 18 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 81 c1cknA_ not modelled 96.9 16 PDB header:capping enzyme Chain: A: PDB Molecule:mrna capping enzyme; PDBTitle: structure of guanylylated mrna capping enzyme complexed2 with gtp 82 d1ixra1 not modelled 96.8 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 83 d1p16a2 not modelled 96.7 20 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:mRNA capping enzyme 84 c2hvsA_ not modelled 96.7 17 PDB header:ligase/dna/rna Chain: A: PDB Molecule:t4 rna ligase 2; PDBTitle: structure of t4 rna ligase 2 with nicked 5'-adenylated2 nucleic acid duplex containing a 2'-deoxyribonucleotide at3 the nick 85 d1cuka2 not modelled 96.6 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 86 c1p16A_ not modelled 96.4 19 PDB header:transferase Chain: A: PDB Molecule:mrna capping enzyme alpha subunit; PDBTitle: structure of an mrna capping enzyme bound to the2 phosphorylated carboxyl-terminal domain of rna polymerase3 ii 87 c1d8lA_ not modelled 96.1 20 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 88 d1pu6a_ not modelled 95.9 17 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 89 d1bvsa2 not modelled 95.8 26 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 90 c1kdhA_ not modelled 95.7 15 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 91 c2csdB_ not modelled 95.6 25 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 92 c2ep8A_ not modelled 95.6 12 PDB header:cell cycle Chain: A: PDB Molecule:pescadillo homolog 1; PDBTitle: solution structure of the brct domain from human pescadillo2 homolog 1 93 c2dunA_ not modelled 95.4 15 PDB header:transferase Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: solution structure of brct domain of dna polymerase mu 94 d1lb2b_ not modelled 95.3 22 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 95 d1doqa_ not modelled 95.2 24 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 96 c8iczA_ not modelled 95.2 22 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 97 c2bcuA_ not modelled 95.2 16 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 98 d1z3eb1 not modelled 95.0 19 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 99 c2ziuA_ not modelled 94.9 14 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 100 d2p6ra2 not modelled 94.7 20 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 101 d1cooa_ not modelled 94.6 21 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 102 d1kzyc2 not modelled 94.5 24 Fold:BRCT domain Superfamily:BRCT domain Family:53BP1 103 d1l0ba2 not modelled 94.5 21 Fold:BRCT domain Superfamily:BRCT domain Family:BRCT domain 104 d2a1ja1 not modelled 94.3 22 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 105 c3f10A_ not modelled 94.2 30 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 106 d1s68a_ not modelled 93.9 20 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:RNA ligase 107 c1s5lu_ not modelled 93.6 10 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 108 c2va8A_ not modelled 93.2 18 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 109 d2axtu1 not modelled 92.8 10 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 110 c2p6uA_ not modelled 92.7 15 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 111 d2noha1 not modelled 92.3 29 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 112 d1keaa_ not modelled 92.3 21 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 113 d1kg2a_ not modelled 92.1 31 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 114 d1in1a_ not modelled 91.7 11 Fold:BRCT domain Superfamily:BRCT domain Family:DNA ligase 115 c1ut8B_ not modelled 91.5 15 PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease 116 d1xo1a1 not modelled 91.3 15 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 117 c3n5nX_ not modelled 91.0 40 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 118 d1ul1x1 not modelled 91.0 23 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 119 d1rrqa1 not modelled 90.9 33 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 120 d2abka_ not modelled 90.9 24 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III