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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2xnkA_

Fold library idPDB HeaderMoleculeTitle
c2xnkA_PDB header: isomeraseChain: A: PDB Molecule: dna topoisomerase 2-binding protein 1;PDBTitle: structure and function of the rad9-binding region of the dna damage2 checkpoint adaptor topbp1


Added to library: Sat Sep 4 08:50:19 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GPXSRNDKEPFFVKFLKSSDNSKCFFKALESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVVF
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Known secondary structure (DSSP)

TTS
SS





S


TTSS
GGG


S




SSS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence DHLKKLGCRIVGPQVVIFCXHHQRCVPRAEHPVYNXVXSDVTISCTSLEKEKREEVHKYVQXXGGRVYRD
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Known secondary structure (DSSP) T


TT





SS
B


TTTT
S

TT

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDINXEDFKCPIFLGCIICVT
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Known secondary structure (DSSP)

TT

SSS
STT


TTTS
SSTTSS
GGGGB

TTTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence GLCGLDRKEVQQLTVKHGGQYXGQLKXNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQD
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Known secondary structure (DSSP) S

TT

SS

TTT


SSS
STT

TS


 .........290.
Sequence ESIYKTEPRPE
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Known secondary structure (DSSP) GGGGBSS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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