PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1kzyD_

Fold library id	PDB Header	Molecule	Title
c1kzyD_	PDB header: dna binding protein, protein binding	Chain: D: PDB Molecule: tumor suppressor p53-binding protein 1;	PDBTitle: crystal structure of the 53bp1 brct region complexed to2 tumor suppressor p53

Links to external resources
Added to library: Tue Mar 16 13:15:33 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A L E E Q R G P L P L N K T L F L G Y A F L L T M A T I P P F N K Q Y T E S Q L R A G A G Y I L E D F N E A Q C N T A Y Q C L L I A D Q H C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T T T T
T T
S S
T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R T R K Y F L C L A S G I P C V S H V W V H D S C H A N Q L Q N Y R N Y L L P A G Y S L E E Q R I L D W Q P R E N P F Q N L K V L L V S D Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
T S
G G G S B
T T T T
T T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q Q N F L E L W S E I L M T G G A A S V K Q H H S S A H N K D I A L G V F D V V V T D P S C P A S V L K C A E A L Q L P V V S Q E W V I Q C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
S S S S S
S
T T S
S
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . .

Sequence L I V G E R I G F K Q H P K Y K H D Y V S H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T S S G G G S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	L	E	E	Q	R	G	P	L	P	L	N	K	T	L	F	L	G	Y	A	F	L	L	T	M	A	T	I	P	P	F	N	K	Q	Y	T	E	S	Q	L	R	A	G	A	G	Y	I	L	E	D	F	N	E	A	Q	C	N	T	A	Y	Q	C	L	L	I	A	D	Q	H	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	T	T	T	T	T	T																									T	T					S	S									T								S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	T	R	K	Y	F	L	C	L	A	S	G	I	P	C	V	S	H	V	W	V	H	D	S	C	H	A	N	Q	L	Q	N	Y	R	N	Y	L	L	P	A	G	Y	S	L	E	E	Q	R	I	L	D	W	Q	P	R	E	N	P	F	Q	N	L	K	V	L	L	V	S	D	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S										T																T	S				G	G	G	S	B							T	T	T	T											T	T	T	T								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	Q	N	F	L	E	L	W	S	E	I	L	M	T	G	G	A	A	S	V	K	Q	H	H	S	S	A	H	N	K	D	I	A	L	G	V	F	D	V	V	V	T	D	P	S	C	P	A	S	V	L	K	C	A	E	A	L	Q	L	P	V	V	S	Q	E	W	V	I	Q	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T											T	T		S							S	S	S	S				S		T	T	S		S						T	T												T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence	L	I	V	G	E	R	I	G	F	K	Q	H	P	K	Y	K	H	D	Y	V	S	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	S				T	T	S	S	G	G	G	S	T	T