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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3ef1A_

Fold library idPDB HeaderMoleculeTitle
c3ef1A_PDB header: hydrolaseChain: A: PDB Molecule: rna polymerase ii subunit a c-terminal domainPDBTitle: the structure of fcp1, an essential rna polymerase ii ctd2 phosphatase


Added to library: Tue Mar 16 12:59:02 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SDLTVSLEEASRLESENVKRLRQEKRLSLIVLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQE
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Known secondary structure (DSSP)
TTTT


BTTT

TT
TTSTTTGGGTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GPSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ
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Known secondary structure (DSSP) TTTT
TTTTT
SS

TTSTTTTT

TTTSS
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KSLRRLFPCDTSMVVVIDDRGDVWDWNPNLIKVVPYEFFVGIGDINSALEEQNKERVTALELQKSERPLA
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Known secondary structure (DSSP)

GGGT
SS

TTS
SGGGTT
TT





STT


S



 .........220.........230.........240.........250.........260.........270.........280
Sequence KQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQK
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Known secondary structure (DSSP) TS

S

S





T

S

SSS



T
 .........290.........300.........310.........320.........330.........340.........350
Sequence VLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKL
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Known secondary structure (DSSP) TSTT
SSS
TTS
STTSTTT

SSSSS

S
S


SSS
 .........360.........370.
Sequence NWLTESLSQWKRLPESDYLLY
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Known secondary structure (DSSP) TS


GGGTB


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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