PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1y98A_

Fold library id	PDB Header	Molecule	Title
c1y98A_	PDB header: antitumor protein	Chain: A: PDB Molecule: breast cancer type 1 susceptibility protein;	PDBTitle: structure of the brct repeats of brca1 bound to a ctip2 phosphopeptide.

Links to external resources
Added to library: Tue Mar 16 12:03:34 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R M S M V V S G L T P E E F M L V Y K F A R K H H I T L T N L I T E E T T H V V M K T D A E F V C E R T L K Y F L G I A G G K W V V S Y F W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S
S S
B
T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V T Q S I K E R K M L N E H D F E V R G D V V N G R N H Q G P K R A R E S Q D R K I F R G L E I C C Y G P F T N M P T D Q L E W M V Q L C G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
G G G T B
T T T B S S
S S S
T T T T
S
S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A S V V K E L S S F T L G T G V H P I V V V Q P D A W T E D N G F H A I G Q M C E A P V V T R E W V L D S V A L Y Q C Q E L D T Y L I P Q I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G
S S S
G G G
S S
S G G G T T G G G
S
T T T S
G G G G B

.

Sequence P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	M	S	M	V	V	S	G	L	T	P	E	E	F	M	L	V	Y	K	F	A	R	K	H	H	I	T	L	T	N	L	I	T	E	E	T	T	H	V	V	M	K	T	D	A	E	F	V	C	E	R	T	L	K	Y	F	L	G	I	A	G	G	K	W	V	V	S	Y	F	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S																T	T					S	S			S	S								B		T	T	S														T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	T	Q	S	I	K	E	R	K	M	L	N	E	H	D	F	E	V	R	G	D	V	V	N	G	R	N	H	Q	G	P	K	R	A	R	E	S	Q	D	R	K	I	F	R	G	L	E	I	C	C	Y	G	P	F	T	N	M	P	T	D	Q	L	E	W	M	V	Q	L	C	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	S				G	G	G	T	B					T	T	T	B	S	S											S	S	S		T	T	T	T							S			S	S	S												T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	S	V	V	K	E	L	S	S	F	T	L	G	T	G	V	H	P	I	V	V	V	Q	P	D	A	W	T	E	D	N	G	F	H	A	I	G	Q	M	C	E	A	P	V	V	T	R	E	W	V	L	D	S	V	A	L	Y	Q	C	Q	E	L	D	T	Y	L	I	P	Q	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	G	G	G				S	S	S									G	G	G		S	S		S	G	G	G	T	T	G	G	G		S						T									T	T	S				G	G	G	G	B
	.
Sequence	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)