Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A9U1
DateThu Jan 5 11:11:22 GMT 2012
Unique Job IDe8379c4950a02eda

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3g5uB_
Top template information
PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
Confidence and coverage
Confidence:100.0% Coverage: 93%
536 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPD
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Disorder  ?????






















































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   .........70.........80.........90.........100.........110.........120
Sequence  SGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFA
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?









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   .........130.........140.........150.........160.........170.........180
Sequence  RLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQM
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?




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   .........190.........200.........210.........220.........230.........240
Sequence  VHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHE
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?
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   .........250.........260.........270.........280.........290.........300
Sequence  GNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPDDIRHADGMPEININETTPRFEDAF
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Disorder  ??





?
??

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?



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   .........310.........320.........330.........340.........350.........360
Sequence  IDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGL
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Disorder 







????????????????



































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   .........370.........380.........390.........400.........410.........420
Sequence  LGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVE
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?























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   .........430.........440.........450.........460.........470.........480
Sequence  QNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPD
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   .........490.........500.........510.........520.........530.........540
Sequence  ILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIAS
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   .........550.........560.........570........
Sequence  GTPDDLKAQSANDEQPDPTMEQAFIQLIHDWDKEHSNE
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Disorder 








?
????
















?

???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3g5u chain B

3D model

Region: 6 - 555
Aligned: 536
Modelled: 550
Confidence: 100.0%
Identity: 24%
PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding

Phyre2

PDB 1yqt chain A

3D model

Region: 9 - 541
Aligned: 446
Modelled: 456
Confidence: 100.0%
Identity: 24%
PDB header:hydrolyase/translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: rnase-l inhibitor

Phyre2

PDB 3bk7 chain A

3D model

Region: 6 - 548
Aligned: 452
Modelled: 480
Confidence: 100.0%
Identity: 25%
PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii

Phyre2

PDB 3ozx chain A

3D model

Region: 10 - 543
Aligned: 445
Modelled: 464
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase, translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)

Phyre2

PDB 2iw3 chain B

3D model

Region: 6 - 541
Aligned: 431
Modelled: 454
Confidence: 100.0%
Identity: 22%
PDB header:translation
Chain: B: PDB Molecule:elongation factor 3a;
PDBTitle: elongation factor 3 in complex with adp

Phyre2

PDB 2ygr chain D

3D model

Region: 12 - 553
Aligned: 464
Modelled: 464
Confidence: 100.0%
Identity: 28%
PDB header:hydrolase
Chain: D: PDB Molecule:uvrabc system protein a;
PDBTitle: mycobacterium tuberculosis uvra

Phyre2

PDB 3pih chain A

3D model

Region: 13 - 553
Aligned: 437
Modelled: 444
Confidence: 100.0%
Identity: 27%
PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna

Phyre2

PDB 2r6f chain A

3D model

Region: 5 - 577
Aligned: 548
Modelled: 566
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:excinuclease abc subunit a;
PDBTitle: crystal structure of bacillus stearothermophilus uvra

Phyre2

PDB 2vf7 chain B

3D model

Region: 40 - 568
Aligned: 436
Modelled: 442
Confidence: 100.0%
Identity: 22%
PDB header:dna-binding protein
Chain: B: PDB Molecule:excinuclease abc, subunit a.;
PDBTitle: crystal structure of uvra2 from deinococcus radiodurans

Phyre2

PDB 2olk chain D

3D model

Region: 329 - 568
Aligned: 234
Modelled: 240
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: D: PDB Molecule:amino acid abc transporter;
PDBTitle: abc protein artp in complex with adp-beta-s

Phyre2

PDB 1oxt chain B

3D model

Region: 1 - 371
Aligned: 309
Modelled: 311
Confidence: 100.0%
Identity: 24%
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, atp binding protein;
PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus

Phyre2

PDB 2yyz chain A

3D model

Region: 328 - 556
Aligned: 228
Modelled: 229
Confidence: 100.0%
Identity: 31%
PDB header:transport protein
Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein;
PDBTitle: crystal structure of sugar abc transporter, atp-binding protein

Phyre2

PDB 2it1 chain B

3D model

Region: 330 - 552
Aligned: 222
Modelled: 223
Confidence: 100.0%
Identity: 32%
PDB header:transport protein
Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin
PDBTitle: structure of ph0203 protein from pyrococcus horikoshii

Phyre2

PDB 1g29 chain 1 domain 2

3D model

Region: 330 - 565
Aligned: 230
Modelled: 236
Confidence: 100.0%
Identity: 30%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 3fvq chain B

3D model

Region: 328 - 556
Aligned: 229
Modelled: 229
Confidence: 100.0%
Identity: 28%
PDB header:hydrolase
Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc;
PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp

Phyre2

PDB 1z47 chain B

3D model

Region: 330 - 556
Aligned: 226
Modelled: 227
Confidence: 100.0%
Identity: 29%
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius

Phyre2

PDB 1oxx chain K domain 2

3D model

Region: 330 - 565
Aligned: 230
Modelled: 236
Confidence: 100.0%
Identity: 30%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 1q1b chain D

3D model

Region: 330 - 554
Aligned: 224
Modelled: 225
Confidence: 100.0%
Identity: 27%
PDB header:transport protein
Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk;
PDBTitle: crystal structure of e. coli malk in the nucleotide-free form

Phyre2

PDB 1vpl chain A

3D model

Region: 330 - 568
Aligned: 234
Modelled: 239
Confidence: 100.0%
Identity: 33%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 3dhw chain C domain 1

3D model

Region: 329 - 555
Aligned: 227
Modelled: 227
Confidence: 100.0%
Identity: 30%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
1

c3g5uB_
2

c1yqtA_
3

c3bk7A_
4

c3ozxA_
5

c2iw3B_
6

c2ygrD_
7

c3pihA_
8

c2r6fA_
9

c2vf7B_
10

c2olkD_
11

c1oxtB_
12

c2yyzA_
13

c2it1B_
14

d1g2912
15

c3fvqB_
16

c1z47B_
17

d1oxxk2
18

c1q1bD_
19

d1vpla_
20

d3dhwc1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3g5uB_



100.0 24 PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
2c1yqtA_



100.0 24 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: rnase-l inhibitor
3c3bk7A_



100.0 25 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
4c3ozxA_



100.0 22 PDB header:hydrolase, translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
5c2iw3B_



100.0 22 PDB header:translation
Chain: B: PDB Molecule:elongation factor 3a;
PDBTitle: elongation factor 3 in complex with adp
6c2ygrD_



100.0 28 PDB header:hydrolase
Chain: D: PDB Molecule:uvrabc system protein a;
PDBTitle: mycobacterium tuberculosis uvra
7c3pihA_



100.0 27 PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
8c2r6fA_



100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:excinuclease abc subunit a;
PDBTitle: crystal structure of bacillus stearothermophilus uvra
9c2vf7B_



100.0 22 PDB header:dna-binding protein
Chain: B: PDB Molecule:excinuclease abc, subunit a.;
PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
10c2olkD_



100.0 31 PDB header:hydrolase
Chain: D: PDB Molecule:amino acid abc transporter;
PDBTitle: abc protein artp in complex with adp-beta-s
11c1oxtB_



100.0 24 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, atp binding protein;
PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus
12c2yyzA_



100.0 31 PDB header:transport protein
Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein;
PDBTitle: crystal structure of sugar abc transporter, atp-binding protein
13c2it1B_



100.0 32 PDB header:transport protein
Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin
PDBTitle: structure of ph0203 protein from pyrococcus horikoshii
14d1g2912



100.0 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
15c3fvqB_



100.0 28 PDB header:hydrolase
Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc;
PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp
16c1z47B_



100.0 29 PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
17d1oxxk2



100.0 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
18c1q1bD_



100.0 27 PDB header:transport protein
Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk;
PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
19d1vpla_



100.0 33 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
20d3dhwc1



100.0 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
21c3dhwC_



not modelled 100.0 28 PDB header:membrane protein/hydrolase
Chain: C: PDB Molecule:methionine import atp-binding protein metn;
PDBTitle: crystal structure of methionine importer metni
22c2d62A_



not modelled 100.0 27 PDB header:sugar binding protein
Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding
PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein
23d1b0ua_



not modelled 100.0 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
24c3gfoA_



not modelled 100.0 26 PDB header:atp binding protein
Chain: A: PDB Molecule:cobalt import atp-binding protein cbio 1;
PDBTitle: structure of cbio1 from clostridium perfringens: part of2 the abc transporter complex cbionq.
25c2pcjB_



not modelled 100.0 24 PDB header:hydrolase
Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold;
PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5
26d3d31a2



not modelled 100.0 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
27c1vciA_



not modelled 100.0 30 PDB header:transport protein
Chain: A: PDB Molecule:sugar-binding transport atp-binding protein;
PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp
28d1ji0a_



not modelled 100.0 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
29c3d31B_



not modelled 100.0 31 PDB header:transport protein
Chain: B: PDB Molecule:sulfate/molybdate abc transporter, atp-binding
PDBTitle: modbc from methanosarcina acetivorans
30d1v43a3



not modelled 100.0 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
31d1g6ha_



not modelled 100.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
32d2pmka1



not modelled 100.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
33c2hydB_



not modelled 100.0 23 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter homolog;
PDBTitle: multidrug abc transporter sav1866
34d1l2ta_



not modelled 100.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
35d3b60a1



not modelled 100.0 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
36c2yz2B_



not modelled 100.0 26 PDB header:hydrolase
Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222;
PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system
37c2d2fA_



not modelled 100.0 26 PDB header:protein binding
Chain: A: PDB Molecule:sufc protein;
PDBTitle: crystal structure of atypical cytoplasmic abc-atpase sufc from thermus2 thermophilus hb8
38d1jj7a_



not modelled 100.0 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
39c2yl4A_



not modelled 100.0 28 PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10
40d1mv5a_



not modelled 100.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
41c3nhaA_



not modelled 100.0 23 PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 6, mitochondrial;
PDBTitle: nucleotide binding domain of human abcb6 (adp mg bound structure)
42c3gd7C_



not modelled 100.0 18 PDB header:hydrolase
Chain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane
PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
43c2nq2C_



not modelled 100.0 20 PDB header:metal transport
Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
44d2hyda1



not modelled 100.0 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
45c3b5xB_



not modelled 100.0 26 PDB header:membrane protein
Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of msba from vibrio cholerae
46c3b5wE_



not modelled 100.0 23 PDB header:membrane protein
Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of eschericia coli msba
47d2onka1



not modelled 100.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
48c2d3wB_



not modelled 100.0 20 PDB header:biosynthetic protein
Chain: B: PDB Molecule:probable atp-dependent transporter sufc;
PDBTitle: crystal structure of escherichia coli sufc, an atpase2 compenent of the suf iron-sulfur cluster assembly machinery
49d1pf4a1



not modelled 100.0 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
50c2cbzA_



not modelled 100.0 22 PDB header:transport
Chain: A: PDB Molecule:multidrug resistance-associated protein 1;
PDBTitle: structure of the human multidrug resistance protein 12 nucleotide binding domain 1
51c2ihyB_



not modelled 100.0 24 PDB header:hydrolase
Chain: B: PDB Molecule:abc transporter, atp-binding protein;
PDBTitle: structure of the staphylococcus aureus putative atpase subunit of an2 atp-binding cassette (abc) transporter
52c2pzfB_



not modelled 100.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:cystic fibrosis transmembrane conductance regulator;
PDBTitle: minimal human cftr first nucleotide binding domain as a head-to-tail2 dimer with delta f508
53d1xmia_



not modelled 100.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
54c2ghiD_



not modelled 100.0 23 PDB header:transport protein
Chain: D: PDB Molecule:transport protein;
PDBTitle: crystal structure of plasmodium yoelii multidrug resistance2 protein 2
55c2pjzA_



not modelled 100.0 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein st1066;
PDBTitle: the crystal structure of putative cobalt transport atp-2 binding protein (cbio-2), st1066
56d1r0wa_



not modelled 100.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
57d1sgwa_



not modelled 100.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
58d1l7vc_



not modelled 100.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
59d2awna2



not modelled 100.0 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
60c1u9iA_



not modelled 100.0 12 PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
61d1cr2a_



not modelled 99.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
62d1w1wa_



not modelled 99.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
63c3tauB_



not modelled 99.9 11 PDB header:transferase
Chain: B: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of a putative guanylate monophosphaste kinase from2 listeria monocytogenes egd-e
64c2j41A_



not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of staphylococcus aureus guanylate2 monophosphate kinase
65c3a4mB_



not modelled 99.8 13 PDB header:transferase
Chain: B: PDB Molecule:l-seryl-trna(sec) kinase;
PDBTitle: crystal structure of archaeal o-phosphoseryl-trna(sec)2 kinase
66c1xexB_



not modelled 99.8 16 PDB header:cell cycle
Chain: B: PDB Molecule:smc protein;
PDBTitle: structural biochemistry of atp-driven dimerization and dna2 stimulated activation of smc atpases.
67c1f2uD_



not modelled 99.7 26 PDB header:replication
Chain: D: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of rad50 abc-atpase
68c2o5vA_



not modelled 99.7 26 PDB header:replication/recombination
Chain: A: PDB Molecule:dna replication and repair protein recf;
PDBTitle: recombination mediator recf
69d1ls1a2



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
70d2qy9a2



not modelled 99.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
71c1ii8B_



not modelled 99.7 28 PDB header:replication
Chain: B: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of the p. furiosus rad50 atpase domain
72c3cmvG_



not modelled 99.6 14 PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
73d1vmaa2



not modelled 99.6 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
74c3lncB_



not modelled 99.5 10 PDB header:transferase
Chain: B: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of guanylate kinase from anaplasma2 phagocytophilum
75c3geiB_



not modelled 99.5 14 PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
76d1okkd2



not modelled 99.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
77d1np6a_



not modelled 99.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
78d1ye8a1



not modelled 99.4 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
79d1e69a_



not modelled 99.2 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
80c1q57G_



not modelled 99.2 14 PDB header:transferase
Chain: G: PDB Molecule:dna primase/helicase;
PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7
81d1qzxa3



not modelled 99.1 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
82c1wxqA_



not modelled 99.0 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3
83d2i3ba1



not modelled 98.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
84c2dr3A_



not modelled 98.9 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0273 protein ph0284;
PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
85d1ewqa2



not modelled 98.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
86c3auyB_



not modelled 98.8 24 PDB header:recombination
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: crystal structure of rad50 bound to adp
87c3thxB_



not modelled 98.7 19 PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna mismatch repair protein msh3;
PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp
88c2o8dB_



not modelled 98.7 21 PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna mismatch repair protein msh6;
PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair
89c2w0mA_



not modelled 98.7 13 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
90c3cf1C_



not modelled 98.7 16 PDB header:transport protein
Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: structure of p97/vcp in complex with adp/adp.alfx
91d1wb9a2



not modelled 98.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
92d1nlfa_



not modelled 98.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
93c2o8bA_



not modelled 98.6 25 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna mismatch repair protein msh2;
PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair
94c1ewqA_



not modelled 98.6 21 PDB header:replication/dna
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution
95c1wbdA_



not modelled 98.5 17 PDB header:dna-binding
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of e. coli dna mismatch repair enzyme2 muts, e38q mutant, in complex with a g.t mismatch
96c1ewrA_



not modelled 98.3 26 PDB header:hydrolase
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of taq muts
97d1tf7a1



not modelled 98.3 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
98c1mkyA_



not modelled 98.2 20 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
99d1yrba1



not modelled 98.1 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
100c3qkuB_



not modelled 98.0 19 PDB header:replication
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: mre11 rad50 binding domain in complex with rad50 and amp-pnp
101c3qg5A_



not modelled 98.0 32 PDB header:hydrolase
Chain: A: PDB Molecule:rad50;
PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair
102c2recB_



not modelled 98.0 13 PDB header:helicase
PDB COMPND:
103d1tf7a2



not modelled 97.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
104c2j7pA_



not modelled 97.9 21 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
105c2cnwF_



not modelled 97.9 18 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
106c1xp8A_



not modelled 97.8 23 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
107c3bh0A_



not modelled 97.8 7 PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
108d1znwa1



not modelled 97.8 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
109d1zp6a1



not modelled 97.8 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Atu3015-like
110d1xp8a1



not modelled 97.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
111c1pznG_



not modelled 97.7 10 PDB header:recombination
Chain: G: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
112c2og2A_



not modelled 97.7 22 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
113c2qthA_



not modelled 97.7 30 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
114c3b9qA_



not modelled 97.7 22 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
115c1ii8A_



not modelled 97.7 19 PDB header:replication
Chain: A: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of the p. furiosus rad50 atpase domain
116c1us8A_



not modelled 97.7 19 PDB header:dna repair
Chain: A: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: the rad50 signature motif: essential to atp binding and2 biological function
117c1xexA_



not modelled 97.7 27 PDB header:cell cycle
Chain: A: PDB Molecule:smc protein;
PDBTitle: structural biochemistry of atp-driven dimerization and dna2 stimulated activation of smc atpases.
118c2zroA_



not modelled 97.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
119c3lxwA_



not modelled 97.6 26 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
120d1ubea1



not modelled 97.6 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0