Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ46915
DateThu Jan 5 12:35:49 GMT 2012
Unique Job IDcc19312497b0d4ec

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3n6jA_
Top template information
PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z
Confidence and coverage
Confidence:100.0% Coverage: 99%
442 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MATQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGDVI
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Disorder  ???????




















































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   .........70.........80.........90.........100.........110.........120
Sequence  YQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALL
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?




??


????












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   .........130.........140.........150.........160.........170.........180
Sequence  DLLGKALNVPVCELLGPGKQREAITVLGYLFYIGDRTKTDLPYVENTPGNHEWYQLRHQK
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??
?????



?????
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   .........190.........200.........210.........220.........230.........240
Sequence  AMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWL
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Disorder  ???
























































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   .........250.........260.........270.........280.........290.........300
Sequence  LDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHA
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   .........310.........320.........330.........340.........350.........360
Sequence  VMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGN
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   .........370.........380.........390.........400.........410.........420
Sequence  PTAIDTHWIWQEGDCRLTQNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGA
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?

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   .........430.........440......
Sequence  RNDAGPMQYLIPGWTFDRKRPVFGRH
Secondary structure 






















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???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3n6j chain A

3D model

Region: 4 - 445
Aligned: 442
Modelled: 442
Confidence: 100.0%
Identity: 72%
PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z

Phyre2

PDB 3mzn chain A

3D model

Region: 7 - 443
Aligned: 436
Modelled: 437
Confidence: 100.0%
Identity: 53%
PDB header:lyase
Chain: A: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of probable glucarate dehydratase from2 chromohalobacter salexigens dsm 3043

Phyre2

PDB 1ec8 chain B

3D model

Region: 5 - 445
Aligned: 441
Modelled: 441
Confidence: 100.0%
Identity: 62%
PDB header:lyase
Chain: B: PDB Molecule:glucarate dehydratase;
PDBTitle: e. coli glucarate dehydratase bound to product 2,3-2 dihydroxy-5-oxo-hexanedioate

Phyre2

PDB 3nxl chain D

3D model

Region: 6 - 444
Aligned: 424
Modelled: 424
Confidence: 100.0%
Identity: 60%
PDB header:lyase
Chain: D: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium

Phyre2

PDB 2pgw chain C

3D model

Region: 8 - 419
Aligned: 369
Modelled: 383
Confidence: 100.0%
Identity: 23%
PDB header:isomerase
Chain: C: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a putative muconate cycloisomerase from2 sinorhizobium meliloti 1021

Phyre2

PDB 2pp1 chain C

3D model

Region: 2 - 417
Aligned: 362
Modelled: 381
Confidence: 100.0%
Identity: 22%
PDB header:lyase
Chain: C: PDB Molecule:l-talarate/galactarate dehydratase;
PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate

Phyre2

PDB 2hxt chain A

3D model

Region: 9 - 409
Aligned: 392
Modelled: 401
Confidence: 100.0%
Identity: 19%
PDB header:unknown function
Chain: A: PDB Molecule:l-fuconate dehydratase;
PDBTitle: crystal structure of l-fuconate dehydratase from xanthomonas2 campestris liganded with mg++ and d-erythronohydroxamate

Phyre2

PDB 2nql chain B

3D model

Region: 6 - 411
Aligned: 361
Modelled: 368
Confidence: 100.0%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens

Phyre2

PDB 2oo6 chain A

3D model

Region: 8 - 418
Aligned: 361
Modelled: 373
Confidence: 100.0%
Identity: 23%
PDB header:isomerase
Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase;
PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400

Phyre2

PDB 3rcy chain C

3D model

Region: 8 - 435
Aligned: 375
Modelled: 380
Confidence: 100.0%
Identity: 23%
PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035

Phyre2

PDB 2qgy chain A

3D model

Region: 5 - 409
Aligned: 357
Modelled: 379
Confidence: 100.0%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:enolase from the environmental genome shotgun
PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea

Phyre2

PDB 2o56 chain D

3D model

Region: 8 - 409
Aligned: 358
Modelled: 376
Confidence: 100.0%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium

Phyre2

PDB 2ox4 chain E

3D model

Region: 8 - 409
Aligned: 358
Modelled: 375
Confidence: 100.0%
Identity: 20%
PDB header:isomerase
Chain: E: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of putative dehydratase from zymomonas mobilis zm4

Phyre2

PDB 3thu chain C

3D model

Region: 7 - 409
Aligned: 342
Modelled: 360
Confidence: 100.0%
Identity: 25%
PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg

Phyre2

PDB 2chr chain A

3D model

Region: 8 - 409
Aligned: 351
Modelled: 359
Confidence: 100.0%
Identity: 23%
PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: a re-evaluation of the crystal structure of chloromuconate2 cycloisomerase

Phyre2

PDB 3i6e chain A

3D model

Region: 8 - 409
Aligned: 339
Modelled: 345
Confidence: 100.0%
Identity: 26%
PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase i;
PDBTitle: crystal structure of muconate lactonizing enzyme from2 ruegeria pomeroyi.

Phyre2

PDB 3h12 chain B

3D model

Region: 8 - 425
Aligned: 376
Modelled: 391
Confidence: 100.0%
Identity: 23%
PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50

Phyre2

PDB 3t6c chain B

3D model

Region: 8 - 439
Aligned: 364
Modelled: 390
Confidence: 100.0%
Identity: 23%
PDB header:lyase
Chain: B: PDB Molecule:putative mand family dehydratase;
PDBTitle: crystal structure of an enolase from pantoea ananatis (efi target efi-2 501676) with bound d-gluconate and mg

Phyre2

PDB 3tji chain A

3D model

Region: 8 - 433
Aligned: 360
Modelled: 384
Confidence: 100.0%
Identity: 20%
PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, n-terminal
PDBTitle: crystal structure of an enolase from enterobacter sp. 638 (efi target2 efi-501662) with bound mg

Phyre2

PDB 1rvk chain A

3D model

Region: 8 - 409
Aligned: 363
Modelled: 368
Confidence: 100.0%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of enolase agr_l_2751 from agrobacterium tumefaciens

Phyre2
1

c3n6jA_
2

c3mznA_
3

c1ec8B_
4

c3nxlD_
5

c2pgwC_
6

c2pp1C_
7

c2hxtA_
8

c2nqlB_
9

c2oo6A_
10

c3rcyC_
11

c2qgyA_
12

c2o56D_
13

c2ox4E_
14

c3thuC_
15

c2chrA_
16

c3i6eA_
17

c3h12B_
18

c3t6cB_
19

c3tjiA_
20

c1rvkA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3n6jA_



100.0 72 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z
2c3mznA_



100.0 53 PDB header:lyase
Chain: A: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of probable glucarate dehydratase from2 chromohalobacter salexigens dsm 3043
3c1ec8B_



100.0 62 PDB header:lyase
Chain: B: PDB Molecule:glucarate dehydratase;
PDBTitle: e. coli glucarate dehydratase bound to product 2,3-2 dihydroxy-5-oxo-hexanedioate
4c3nxlD_



100.0 60 PDB header:lyase
Chain: D: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium
5c2pgwC_



100.0 23 PDB header:isomerase
Chain: C: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a putative muconate cycloisomerase from2 sinorhizobium meliloti 1021
6c2pp1C_



100.0 22 PDB header:lyase
Chain: C: PDB Molecule:l-talarate/galactarate dehydratase;
PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate
7c2hxtA_



100.0 19 PDB header:unknown function
Chain: A: PDB Molecule:l-fuconate dehydratase;
PDBTitle: crystal structure of l-fuconate dehydratase from xanthomonas2 campestris liganded with mg++ and d-erythronohydroxamate
8c2nqlB_



100.0 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens
9c2oo6A_



100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase;
PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400
10c3rcyC_



100.0 23 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035
11c2qgyA_



100.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:enolase from the environmental genome shotgun
PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea
12c2o56D_



100.0 20 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium
13c2ox4E_



100.0 20 PDB header:isomerase
Chain: E: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of putative dehydratase from zymomonas mobilis zm4
14c3thuC_



100.0 25 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg
15c2chrA_



100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: a re-evaluation of the crystal structure of chloromuconate2 cycloisomerase
16c3i6eA_



100.0 26 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase i;
PDBTitle: crystal structure of muconate lactonizing enzyme from2 ruegeria pomeroyi.
17c3h12B_



100.0 23 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50
18c3t6cB_



100.0 23 PDB header:lyase
Chain: B: PDB Molecule:putative mand family dehydratase;
PDBTitle: crystal structure of an enolase from pantoea ananatis (efi target efi-2 501676) with bound d-gluconate and mg
19c3tjiA_



100.0 20 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, n-terminal
PDBTitle: crystal structure of an enolase from enterobacter sp. 638 (efi target2 efi-501662) with bound mg
20c1rvkA_



100.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of enolase agr_l_2751 from agrobacterium tumefaciens
21c2gl5A_



not modelled 100.0 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase protein;
PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium
22c1nu5A_



not modelled 100.0 24 PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: crystal structure of pseudomonas sp. p51 chloromuconate lactonizing2 enzyme
23c2ps2A_



not modelled 100.0 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of putative mandelate racemase/muconate2 lactonizing enzyme from aspergillus oryzae
24c3my9A_



not modelled 100.0 24 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a muconate cycloisomerase from azorhizobium2 caulinodans
25c2qddA_



not modelled 100.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from roseovarius2 nubinhibens ism
26c1f9cA_



not modelled 100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:protein (muconate cycloisomerase i);
PDBTitle: crystal structure of mle d178n variant
27c2qjjC_



not modelled 100.0 23 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans
28c3mkcA_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:racemase;
PDBTitle: crystal structure of a putative racemase
29c3rr1B_



not modelled 100.0 25 PDB header:lyase
Chain: B: PDB Molecule:putative d-galactonate dehydratase;
PDBTitle: crystal structure of enolase prk14017 (target efi-500653) from2 ralstonia pickettii 12j
30c2qq6B_



not modelled 100.0 23 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941
31c2oqhD_



not modelled 100.0 26 PDB header:isomerase
Chain: D: PDB Molecule:putative isomerase;
PDBTitle: crystal structure of an isomerase from streptomyces coelicolor a3(2)
32c3fv9D_



not modelled 100.0 18 PDB header:hydrolase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of putative mandelate racemase/muconatelactonizing2 enzyme from roseovarius nubinhibens ism complexed with magnesium
33c3dg7B_



not modelled 100.0 22 PDB header:isomerase
Chain: B: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of muconate lactonizing enzyme from mucobacterium2 smegmatis complexed with muconolactone
34c2qdeA_



not modelled 100.0 28 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1
35c3sqsA_



not modelled 100.0 19 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12
36c3sjnB_



not modelled 100.0 26 PDB header:lyase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of enolase spea_3858 (target efi-500646) from2 shewanella pealeana with magnesium bound
37c3i4kA_



not modelled 100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:muconate lactonizing enzyme;
PDBTitle: crystal structure of muconate lactonizing enzyme from2 corynebacterium glutamicum
38c3n4eA_



not modelled 100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, c-terminal
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from paracoccus denitrificans pd1222
39c2rdxG_



not modelled 100.0 23 PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, putative;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from roseovarius nubinhibens ism
40c3bsmD_



not modelled 100.0 22 PDB header:lyase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens
41c2pmqA_



not modelled 100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from roseovarius sp. htcc2601
42c3bjsB_



not modelled 100.0 25 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from polaromonas2 sp. js666
43c3dipA_



not modelled 100.0 22 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase protein from the2 environmental genome shotgun sequencing of the sargasso sea
44c3es8D_



not modelled 100.0 23 PDB header:isomerase, lyase
Chain: D: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of divergent enolase from oceanobacillus2 iheyensis complexed with mg and l-malate.
45c2pozA_



not modelled 100.0 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase;
PDBTitle: crystal structure of a putative dehydratase from mesorhizobium loti
46c2podA_



not modelled 100.0 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase / muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from burkholderia2 pseudomallei k96243
47c3tj4B_



not modelled 100.0 20 PDB header:lyase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of an enolase from agrobacterium tumefaciens (efi2 target efi-502087) no mg
48c3dfhC_



not modelled 100.0 20 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3
49c2gdqB_



not modelled 100.0 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yitf;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution
50c3q45E_



not modelled 100.0 17 PDB header:isomerase
Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family;
PDBTitle: crystal structure of dipeptide epimerase from cytophaga hutchinsonii2 complexed with mg and dipeptide d-ala-l-val
51c3mqtV_



not modelled 100.0 24 PDB header:isomerase
Chain: V: PDB Molecule:
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from shewanella pealeana
52c2oz3F_



not modelled 100.0 18 PDB header:lyase
Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii
53c2hzgB_



not modelled 100.0 20 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme/enolase
PDBTitle: crystal stucture of predicted mandelate racemase from rhodobacter2 sphaeroides
54c3cxoA_



not modelled 100.0 21 PDB header:lyase
Chain: A: PDB Molecule:putative galactonate dehydratase;
PDBTitle: crystal structure of l-rhamnonate dehydratase from2 salmonella typhimurium complexed with mg and 3-deoxy-l-3 rhamnonate
55c2ppgB_



not modelled 100.0 24 PDB header:isomerase
Chain: B: PDB Molecule:putative isomerase;
PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti
56c3toyC_



not modelled 100.0 23 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of enolase brado_4202 (target efi-501651) from2 bradyrhizobium sp. ors278 with calcium and acetate bound
57c2p88E_



not modelled 100.0 24 PDB header:lyase
Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme
PDBTitle: crystal structure of n-succinyl arg/lys racemase from2 bacillus cereus atcc 14579
58c3cb3B_



not modelled 100.0 24 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of l-talarate dehydratase from polaromonas sp. js6662 complexed with mg and l-glucarate
59c3t8qA_



not modelled 100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica
60c1mraA_



not modelled 100.0 21 PDB header:racemase
Chain: A: PDB Molecule:mandelate racemase;
PDBTitle: mandelate racemase mutant d270n co-crystallized with (s)-atrolactate
61c3eezA_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme from silicibacter pomeroyi
62c3ugvE_



not modelled 100.0 23 PDB header:lyase
Chain: E: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase from alpha pretobacterium bal199 (efi2 target efi-501650) with bound mg
63c2zc8B_



not modelled 100.0 25 PDB header:metal binding protein
Chain: B: PDB Molecule:n-acylamino acid racemase;
PDBTitle: crystal structure of n-acylamino acid racemase from thermus2 thermophilus hb8
64c3t9pB_



not modelled 100.0 23 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme family protein from roseovarius
65c2ovlA_



not modelled 100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:putative racemase;
PDBTitle: crystal structure of a racemase from streptomyces2 coelicolor a3(2)
66c1wueA_



not modelled 100.0 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of protein gi:29375081, unknown member of enolase2 superfamily from enterococcus faecalis v583
67c2fkpC_



not modelled 100.0 27 PDB header:isomerase
Chain: C: PDB Molecule:n-acylamino acid racemase;
PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase
68c3ik4A_



not modelled 100.0 19 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus
69c3ddmD_



not modelled 100.0 22 PDB header:lyase
Chain: D: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50
70c3fcpF_



not modelled 100.0 24 PDB header:isomerase
Chain: F: PDB Molecule:l-ala-d/l-glu epimerase, a muconate lactonizing
PDBTitle: crystal structure of muconate lactonizing enzyme from2 klebsiella pneumoniae
71c2p0iA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:l-rhamnonate dehydratase;
PDBTitle: crystal structure of l-rhamnonate dehydratase from gibberella zeae
72c3cyjA_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme-2 like protein from rubrobacter xylanophilus
73c3mwcA_



not modelled 100.0 16 PDB header:ligase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of probable o-succinylbenzoic acid synthetase from2 kosmotoga olearia
74c1wufB_



not modelled 100.0 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein lin2664;
PDBTitle: crystal structure of protein gi:16801725, member of enolase2 superfamily from listeria innocua clip11262
75c3px5A_



not modelled 100.0 19 PDB header:metal binding protein
Chain: A: PDB Molecule:enzyme of enolase superfamily;
PDBTitle: structure of efi enolase target en500555, a putative dipeptide2 epimerase: apo structure
76c1sjaA_



not modelled 100.0 23 PDB header:lyase, isomerase
Chain: A: PDB Molecule:n-acylamino acid racemase;
PDBTitle: x-ray structure of o-succinylbenzoate synthase complexed2 with n-acetylmethionine
77c3n4fD_



not modelled 100.0 21 PDB header:isomerase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10
78c2dw7G_



not modelled 100.0 18 PDB header:lyase
Chain: G: PDB Molecule:bll6730 protein;
PDBTitle: crystal structure of d-tartrate dehydratase from2 bradyrhizobium japonicum complexed with mg++ and meso-3 tartrate
79c2oz8B_



not modelled 100.0 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mll7089 protein;
PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti
80c3msyC_



not modelled 100.0 21 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from a marine actinobacterium
81c1jpmB_



not modelled 100.0 20 PDB header:isomerase
Chain: B: PDB Molecule:l-ala-d/l-glu epimerase;
PDBTitle: l-ala-d/l-glu epimerase
82c3jw7E_



not modelled 100.0 21 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from enterococcus faecalis2 v583 complexed with mg and dipeptide l-ile-l-tyr
83c3ritE_



not modelled 100.0 21 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from methylococcus capsulatus2 complexed with mg and dipeptide l-arg-d-lys
84c3qldB_



not modelled 100.0 20 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: structure of probable mandelate racemase (aalaa1draft_2112) from2 alicyclobacillus acidocaldarius
85d1jdfa1



not modelled 100.0 67 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
86c3dfyJ_



not modelled 100.0 23 PDB header:isomerase
Chain: J: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of apo dipeptide epimerase from2 thermotoga maritima
87c3ijlA_



not modelled 100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase;
PDBTitle: structure of dipeptide epimerase from bacteroides thetaiotaomicron2 complexed with l-pro-d-glu; nonproductive substrate binding.
88c2oktA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:o-succinylbenzoic acid synthetase;
PDBTitle: crystal structure of o-succinylbenzoic acid synthetase from2 staphylococcus aureus, ligand-free form
89d1bqga1



not modelled 100.0 70 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
90c2pgeA_



not modelled 100.0 21 PDB header:lyase
Chain: A: PDB Molecule:menc;
PDBTitle: crystal structure of menc from desulfotalea psychrophila2 lsv54
91c1jpdX_



not modelled 100.0 16 PDB header:isomerase
Chain: X: PDB Molecule:l-ala-d/l-glu epimerase;
PDBTitle: l-ala-d/l-glu epimerase
92d1muca1



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
93d2gl5a1



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
94d1nu5a1



not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
95d2chra1



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
96c3cawB_



not modelled 100.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:o-succinylbenzoate synthase;
PDBTitle: crystal structure of o-succinylbenzoate synthase from2 bdellovibrio bacteriovorus liganded with mg
97d1rvka1



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
98d1wuea1



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
99d1wufa1



not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
100d1r0ma1



not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
101d2gdqa1



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
102d1sjda1



not modelled 100.0 26 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
103d1yeya1



not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
104d1tzza1



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
105c2oztA_



not modelled 100.0 19 PDB header:lyase
Chain: A: PDB Molecule:tlr1174 protein;
PDBTitle: crystal structure of o-succinylbenzoate synthase from2 thermosynechococcus elongatus bp-1
106c1kczA_



not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:beta-methylaspartase;
PDBTitle: crystal structure of beta-methylaspartase from clostridium2 tetanomorphum. mg-complex.
107d2mnra1



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
108c1kkoB_



not modelled 100.0 17 PDB header:lyase
Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase;
PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase
109d1jpma1



not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
110c2qvhB_



not modelled 100.0 23 PDB header:lyase
Chain: B: PDB Molecule:o-succinylbenzoate-coa synthase;
PDBTitle: crystal structure of o-succinylbenzoate synthase complexed with o-2 succinyl benzoate (osb)
111c3gc2A_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:o-succinylbenzoate synthase;
PDBTitle: 1.85 angstrom crystal structure of o-succinylbenzoate synthase from2 salmonella typhimurium in complex with succinic acid
112c2pa6A_



not modelled 100.0 18 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of mj0232 from methanococcus jannaschii
113c3uj2C_



not modelled 100.0 17 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: crystal structure of an enolase from anaerostipes caccae (efi target2 efi-502054) with bound mg and sulfate
114c1l8pC_



not modelled 100.0 18 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: mg-phosphonoacetohydroxamate complex of s39a yeast enolase 1
115c3tqpA_



not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: structure of an enolase (eno) from coxiella burnetii
116c3qn3B_



not modelled 100.0 16 PDB header:lyase
Chain: B: PDB Molecule:enolase;
PDBTitle: phosphopyruvate hydratase from campylobacter jejuni.
117c1iyxA_



not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of enolase from enterococcus hirae
118c2akmA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:gamma enolase;
PDBTitle: fluoride inhibition of enolase: crystal structure of the2 inhibitory complex
119c2fymA_



not modelled 100.0 13 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of e. coli enolase complexed with the2 minimal binding segment of rnase e.
120c2ptwA_



not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of the t. brucei enolase complexed with2 sulphate, identification of a metal binding site iv

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0