Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Y	Q	P	V	A	L	F	I	G	L	R	Y	M	R	G	R	A	A	D	R	F	G	R	F	V	S	W	L	S	T	I	G	I	T	L	G	V	M	A	L	V	T	V	L	S	V	M	N	G	F	E	R	E	L	Q	N	N	I	L
Secondary structure
SS confidence
Disorder		?	?	?	?														?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	L	M	P	Q	A	I	L	S	S	E	H	G	S	L	N	P	Q	Q	L	P	E	T	A	V	K	L	D	G	V	N	R	V	A	P	I	T	T	G	D	V	V	L	Q	S	A	R	S	V	A	V	G	V	M	L	G	I	D	P	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?				?		?	?	?	?	?	?																															?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	K	D	P	L	T	P	Y	L	V	N	V	K	Q	T	D	L	E	P	G	K	Y	N	V	I	L	G	E	Q	L	A	S	Q	L	G	V	N	R	G	D	Q	I	R	V	M	V	P	S	A	S	Q	F	T	P	M	G	R	I	P	S
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?		?	?																											?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	R	L	F	N	V	I	G	T	F	A	A	N	S	E	V	D	G	Y	E	M	L	V	N	I	E	D	A	S	R	L	M	R	Y	P	A	G	N	I	T	G	W	R	L	W	L	D	E	P	L	K	V	D	S	L	S	Q	Q	K	L
Secondary structure
SS confidence
Disorder		?	?									?	?		?	?	?	?	?																	?	?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	E	G	S	K	W	Q	D	W	R	D	R	K	G	E	L	F	Q	A	V	R	M	E	K	N	M	M	G	L	L	L	S	L	I	V	A	V	A	A	F	N	I	I	T	S	L	G	L	M	V	M	E	K	Q	G	E	V	A	I	L
Secondary structure
SS confidence
Disorder		?	?																																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Q	T	Q	G	L	T	P	R	Q	I	M	M	V	F	M	V	Q	G	A	S	A	G	I	I	G	A	I	L	G	A	A	L	G	A	L	L	A	S	Q	L	N	N	L	M	P	I	I	G	V	L	L	D	G	A	A	L	P	V	A	I
Secondary structure
SS confidence
Disorder																																														?		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Sequence		E	P	L	Q	V	I	V	I	A	L	V	A	M	A	I	A	L	L	S	T	L	Y	P	S	W	R	A	A	A	T	Q	P	A	E	A	L	R	Y	E
Secondary structure
SS confidence
Disorder																																					?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ftj chain A Region: 78 - 258 Aligned: 161 Modelled: 166 Confidence: 98.1% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans Phyre2 PDB 3is6 chain A Region: 80 - 239 Aligned: 153 Modelled: 160 Confidence: 97.9% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:putative permease protein, abc transporter; PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a Phyre2 PDB 1cii chain A Region: 256 - 347 Aligned: 87 Modelled: 92 Confidence: 83.2% Identity: 14% PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Phyre2 PDB 1h0h chain A domain 1 Region: 140 - 186 Aligned: 47 Modelled: 47 Confidence: 38.5% Identity: 15% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 1vlf chain M domain 1 Region: 144 - 187 Aligned: 44 Modelled: 44 Confidence: 34.8% Identity: 18% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 1tmo chain A domain 1 Region: 139 - 187 Aligned: 49 Modelled: 49 Confidence: 33.0% Identity: 18% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 1mvf chain D Region: 140 - 170 Aligned: 31 Modelled: 31 Confidence: 32.7% Identity: 16% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 1kqf chain A domain 1 Region: 139 - 186 Aligned: 48 Modelled: 48 Confidence: 30.8% Identity: 23% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 2iv2 chain X Region: 136 - 187 Aligned: 52 Modelled: 52 Confidence: 29.8% Identity: 12% PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli Phyre2 PDB 1ub4 chain C Region: 140 - 170 Aligned: 31 Modelled: 31 Confidence: 29.1% Identity: 16% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 1g8k chain A domain 1 Region: 141 - 201 Aligned: 61 Modelled: 61 Confidence: 28.9% Identity: 16% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 2a8v chain A Region: 134 - 171 Aligned: 38 Modelled: 38 Confidence: 27.3% Identity: 11% PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex Phyre2 PDB 1ogy chain A domain 1 Region: 139 - 182 Aligned: 44 Modelled: 44 Confidence: 25.9% Identity: 20% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 2jio chain A domain 1 Region: 107 - 193 Aligned: 87 Modelled: 87 Confidence: 25.8% Identity: 13% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 1eu1 chain A Region: 139 - 187 Aligned: 49 Modelled: 49 Confidence: 25.0% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments. Phyre2 PDB 2iv2 chain X domain 1 Region: 136 - 204 Aligned: 69 Modelled: 69 Confidence: 24.2% Identity: 13% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 3lti chain A Region: 299 - 314 Aligned: 16 Modelled: 16 Confidence: 24.2% Identity: 38% PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains Phyre2 PDB 1y5i chain A domain 1 Region: 138 - 187 Aligned: 50 Modelled: 50 Confidence: 24.0% Identity: 20% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 1a62 chain A domain 2 Region: 134 - 171 Aligned: 38 Modelled: 38 Confidence: 22.9% Identity: 11% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2v45 chain A Region: 139 - 187 Aligned: 49 Modelled: 49 Confidence: 22.1% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand Phyre2 1 c3ftjA_ 2 c3is6A_ 3 c1ciiA_ 4 d1h0ha1 5 d1vlfm1 6 d1tmoa1 7 d1mvfd_ 8 d1kqfa1 9 c2iv2X_ 10 d1ub4c_ 11 d1g8ka1 12 c2a8vA_ 13 d1ogya1 14 d2jioa1 15 c1eu1A_ 16 d2iv2x1 17 c3ltiA_ 18 d1y5ia1 19 d1a62a2 20 c2v45A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ftjA_ 98.1 16 PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans 2 c3is6A_ 97.9 14 PDB header:transport protein Chain: A: PDB Molecule:putative permease protein, abc transporter; PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a 3 c1ciiA_ 83.2 14 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 4 d1h0ha1 38.5 15 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 5 d1vlfm1 34.8 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 6 d1tmoa1 33.0 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 7 d1mvfd_ 32.7 16 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 8 d1kqfa1 30.8 23 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 9 c2iv2X_ 29.8 12 PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli 10 d1ub4c_ 29.1 16 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 11 d1g8ka1 28.9 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 12 c2a8vA_ 27.3 11 PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex 13 d1ogya1 25.9 20 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 14 d2jioa1 25.8 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 15 c1eu1A_ 25.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments. 16 d2iv2x1 24.2 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 17 c3ltiA_ 24.2 38 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 18 d1y5ia1 24.0 20 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 19 d1a62a2 22.9 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 20 c2v45A_ 22.1 18 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand 21 d3dhwa1 not modelled 21.4 15 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 22 d1eu1a1 not modelled 21.0 11 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 23 d1dmra1 not modelled 20.4 11 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 24 c1h5nC_ not modelled 17.6 16 PDB header:oxidoreductase Chain: C: PDB Molecule:dmso reductase; PDBTitle: dmso reductase modified by the presence of dms and air 25 c2ivfA_ not modelled 17.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 26 c1h0hA_ not modelled 16.8 15 PDB header:dehydrogenase Chain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas 27 c1tmoA_ not modelled 15.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia 28 d1e32a1 not modelled 14.3 13 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 29 c2e7zA_ not modelled 13.4 16 PDB header:lyase Chain: A: PDB Molecule:acetylene hydratase ahy; PDBTitle: acetylene hydratase from pelobacter acetylenicus 30 c1vlfQ_ not modelled 12.8 18 PDB header:oxidoreductase Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici complexed3 with inhibitor 1,2,4,5-tetrahydroxy-benzene 31 c1kqgA_ not modelled 12.7 24 PDB header:oxidoreductase Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit; PDBTitle: formate dehydrogenase n from e. coli 32 d1cola_ not modelled 12.4 14 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 33 c2yujA_ not modelled 11.9 14 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 34 c2pjhB_ not modelled 11.6 13 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 35 c2ht2B_ not modelled 11.6 11 PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex 36 c1g8jC_ not modelled 11.5 17 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 37 c2glwA_ not modelled 10.8 23 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 38 c1zc1A_ not modelled 10.7 14 PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites 39 c1y5iA_ not modelled 10.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain; PDBTitle: the crystal structure of the narghi mutant nari-k86a 40 c1ogyA_ not modelled 10.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides 41 d1cz5a1 not modelled 10.4 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 42 c3fewX_ not modelled 10.3 17 PDB header:immune system Chain: X: PDB Molecule:colicin s4; PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain 43 c2l66B_ not modelled 10.3 8 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 44 d1otsa_ not modelled 10.1 12 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 45 c2cwbA_ not modelled 10.1 12 PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin 46 d2vbua1 not modelled 9.9 23 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 47 c1wr1B_ not modelled 9.9 8 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 48 d1ylea1 not modelled 9.8 31 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:AstA-like 49 d2dnaa1 not modelled 9.6 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 50 d2bwba1 not modelled 9.5 8 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 51 c2nyaF_ not modelled 9.5 11 PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli 52 c2ki8A_ not modelled 9.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7 53 c2dahA_ not modelled 9.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 54 c2dnaA_ not modelled 8.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 55 d1veja1 not modelled 8.8 24 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 56 d2daha1 not modelled 8.7 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 57 c2w1tB_ not modelled 8.7 16 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 58 d1dzfa2 not modelled 8.6 22 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 59 c2vpyE_ not modelled 8.3 21 PDB header:oxidoreductase Chain: E: PDB Molecule:thiosulfate reductase; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 60 d2yvxa3 not modelled 8.3 18 Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like 61 c2fugC_ not modelled 8.3 12 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 62 c2jy5A_ not modelled 7.6 16 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 63 d1rqpa1 not modelled 7.4 22 Fold:Bacterial fluorinating enzyme, C-terminal domain Superfamily:Bacterial fluorinating enzyme, C-terminal domain Family:Bacterial fluorinating enzyme, C-terminal domain 64 d1scjb_ not modelled 7.3 16 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 65 c1cz5A_ not modelled 7.2 17 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 66 d1hmja_ not modelled 7.2 18 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 67 c2fhdA_ not modelled 7.1 5 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains 68 d2fy9a1 not modelled 7.1 16 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 69 d1yfba1 not modelled 7.0 19 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 70 c1wlfA_ not modelled 6.8 16 PDB header:protein transport Chain: A: PDB Molecule:peroxisome biogenesis factor 1; PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain 71 c2k21A_ not modelled 6.8 11 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 72 c2k29A_ not modelled 6.7 26 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 73 d1dv0a_ not modelled 6.7 8 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 74 c2yvxD_ not modelled 6.6 15 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 75 c3nd0A_ not modelled 6.4 20 PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter 76 c2w2mP_ not modelled 6.3 30 PDB header:hydrolase/receptor Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: wt pcsk9-deltac bound to wt egf-a of ldlr 77 c2pmwA_ not modelled 6.3 30 PDB header:hydrolase Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: the crystal structure of proprotein convertase subtilisin2 kexin type 9 (pcsk9) 78 c2p4eP_ not modelled 6.3 30 PDB header:hydrolase Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: crystal structure of pcsk9 79 d2cu3a1 not modelled 6.1 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 80 c2e75E_ not modelled 6.1 20 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus 81 c2e76E_ not modelled 6.1 20 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 82 c1vf5R_ not modelled 6.1 20 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 83 d2e74e1 not modelled 6.1 20 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 84 c1vf5E_ not modelled 6.1 20 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 85 c2e74E_ not modelled 6.1 20 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 86 c2kncB_ not modelled 6.0 12 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 87 d1spbp_ not modelled 6.0 15 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 88 c2kncA_ not modelled 5.9 22 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 89 d1yloa1 not modelled 5.7 24 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 90 d1zq1a1 not modelled 5.7 11 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 91 d1q08a_ not modelled 5.7 8 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators 92 c2kl0A_ not modelled 5.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 93 c2cw5B_ not modelled 5.6 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:bacterial fluorinating enzyme homolog; PDBTitle: crystal structure of a conserved hypothetical protein from2 thermus thermophilus hb8 94 c2jpcA_ not modelled 5.6 23 PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein 95 d1dgsa2 not modelled 5.6 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 96 d2d6fa1 not modelled 5.5 14 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 97 d3d31c1 not modelled 5.5 15 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 98 c3d31D_ not modelled 5.5 15 PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans 99 c2f4nA_ not modelled 5.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein mj1651; PDBTitle: crystal structure of protein mj1651 from methanococcus2 jannaschii dsm 2661, pfam duf62

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0