PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3d31D_

Fold library id	PDB Header	Molecule	Title
c3d31D_	PDB header: transport protein	Chain: D: PDB Molecule: sulfate/molybdate abc transporter, permease	PDBTitle: modbc from methanosarcina acetivorans

Links to external resources
Added to library: Tue Mar 16 14:29:30 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P L T F V F S F L L L V L F L F I F L T L S N M I F E Q I T E D F S G L V K A A G N R S V I S S I F L S L Y A G F L A T L L A L L L G A P T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G Y I L A R F D F P G K R L V E S I I D V P V V V P H T V A G I A L L T V F G S R G L I G E P L E S Y I Q F R D A L P G I V V A M L F V S M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T G G G T S
S T T S T T T G G G T T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P Y L A N S A R E G F K S V D P R L E N A A R S L G A P L W K A F F F V T L P L S A R Y L L I G S V M T W A R A I S E F G A V V I L A Y Y P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . .

Sequence M V G P T L I Y D R F I S Y G L S A S R P I A V L L I L V T L S I F L V I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	L	T	F	V	F	S	F	L	L	L	V	L	F	L	F	I	F	L	T	L	S	N	M	I	F	E	Q	I	T	E	D	F	S	G	L	V	K	A	A	G	N	R	S	V	I	S	S	I	F	L	S	L	Y	A	G	F	L	A	T	L	L	A	L	L	L	G	A	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	Y	I	L	A	R	F	D	F	P	G	K	R	L	V	E	S	I	I	D	V	P	V	V	V	P	H	T	V	A	G	I	A	L	L	T	V	F	G	S	R	G	L	I	G	E	P	L	E	S	Y	I	Q	F	R	D	A	L	P	G	I	V	V	A	M	L	F	V	S	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T				T	T										G	G	G	T	S														S	T	T	S	T	T	T	G	G	G	T	T	T				T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	Y	L	A	N	S	A	R	E	G	F	K	S	V	D	P	R	L	E	N	A	A	R	S	L	G	A	P	L	W	K	A	F	F	F	V	T	L	P	L	S	A	R	Y	L	L	I	G	S	V	M	T	W	A	R	A	I	S	E	F	G	A	V	V	I	L	A	Y	Y	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S											T	T										T																						T											T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Sequence	M	V	G	P	T	L	I	Y	D	R	F	I	S	Y	G	L	S	A	S	R	P	I	A	V	L	L	I	L	V	T	L	S	I	F	L	V	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	T	T	T	T	T