PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3is6A_

Fold library id	PDB Header	Molecule	Title
c3is6A_	PDB header: transport protein	Chain: A: PDB Molecule: putative permease protein, abc transporter;	PDBTitle: the crystal structure of a domain of a putative permease2 protein from porphyromonas gingivalis to 2a

Links to external resources
Added to library: Sun Aug 29 01:37:35 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E R D F P H H D R I C I V K T H G T R Q E G D K P E E L D F S Q V S G G V A P A I Q E E I P G V E L A T R T T L Y G T S K X I L E D N K T Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G
S
S
B
T T
T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E T K T L L A E P A F L D X F G V E L I A G V R D S A L R D N X T C L I S E S L A R K X G G D V L G K R L R P A E S K S D R A I T I G G V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
G G G T T
S T T T T S
T T
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E D L P H N S S I Q A D X L L P I T W X P A E S L N N W I G N D R Y I A Y V R L R P G V S P E S L D E A L L E X Q K R H Q D X E V F R K A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S B S
S G G G S
T
S S
B
T T
G G G G
S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . .

Sequence V E L H Y S L T P F N R L R L E D P T L V N X L R I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	R	D	F	P	H	H	D	R	I	C	I	V	K	T	H	G	T	R	Q	E	G	D	K	P	E	E	L	D	F	S	Q	V	S	G	G	V	A	P	A	I	Q	E	E	I	P	G	V	E	L	A	T	R	T	T	L	Y	G	T	S	K	X	I	L	E	D	N	K	T	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	G	G	G														S								S		B		T	T										T	T																		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	T	K	T	L	L	A	E	P	A	F	L	D	X	F	G	V	E	L	I	A	G	V	R	D	S	A	L	R	D	N	X	T	C	L	I	S	E	S	L	A	R	K	X	G	G	D	V	L	G	K	R	L	R	P	A	E	S	K	S	D	R	A	I	T	I	G	G	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T						T	T								G	G	G	T	T		S	T	T												T	T	S			T	T						T	T			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	D	L	P	H	N	S	S	I	Q	A	D	X	L	L	P	I	T	W	X	P	A	E	S	L	N	N	W	I	G	N	D	R	Y	I	A	Y	V	R	L	R	P	G	V	S	P	E	S	L	D	E	A	L	L	E	X	Q	K	R	H	Q	D	X	E	V	F	R	K	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	B	S				S					G	G	G	S						T			S	S				B								T	T			G	G	G	G														S						T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence	V	E	L	H	Y	S	L	T	P	F	N	R	L	R	L	E	D	P	T	L	V	N	X	L	R	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													B													T