PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2pjhB_

Fold library id	PDB Header	Molecule	Title
c2pjhB_	PDB header: transport protein	Chain: B: PDB Molecule: transitional endoplasmic reticulum atpase;	PDBTitle: strctural model of the p97 n domain- npl4 ubd complex

Links to external resources
Added to library: Tue Mar 16 14:11:49 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N R P N R L I V D E A I N E D N S V V S L S Q P K M D E L Q L F R G D T V L L K G K K R R E A V C I V L S D D T C S D E K I R M N R V V R N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T
T T
S S
S T T
T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N L R V R L G D V I S I Q P C P D V K Y G K R I H V L P I D D T V E G I T G N L F E V Y L K P Y F L E A Y R P I R K G D I F L V R G G M R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S S
B
S
B G G G S T T
S
T T T T T T T T T T T T
T T
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . .

Sequence V E F K V V E T D P S P Y C I V A P D T V I H C E G E P I K R E D E E E S L N E V G Y D D V G G C R K Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
T T S
S
B
S S S
T T S
G G G
S
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	R	P	N	R	L	I	V	D	E	A	I	N	E	D	N	S	V	V	S	L	S	Q	P	K	M	D	E	L	Q	L	F	R	G	D	T	V	L	L	K	G	K	K	R	R	E	A	V	C	I	V	L	S	D	D	T	C	S	D	E	K	I	R	M	N	R	V	V	R	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T								S				T	T												T	T			S	S								S	T	T											T	T	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	L	R	V	R	L	G	D	V	I	S	I	Q	P	C	P	D	V	K	Y	G	K	R	I	H	V	L	P	I	D	D	T	V	E	G	I	T	G	N	L	F	E	V	Y	L	K	P	Y	F	L	E	A	Y	R	P	I	R	K	G	D	I	F	L	V	R	G	G	M	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			T	T									S	S			B		S							B	G	G	G	S	T	T			S			T	T	T	T	T	T	T	T	T	T	T	T						T	T							S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Sequence	V	E	F	K	V	V	E	T	D	P	S	P	Y	C	I	V	A	P	D	T	V	I	H	C	E	G	E	P	I	K	R	E	D	E	E	E	S	L	N	E	V	G	Y	D	D	V	G	G	C	R	K	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	S	S						T	T	S						S			B				S	S	S			T	T	S			G	G	G			S		S	T	T