Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	M	K	K	L	A	T	L	V	S	A	V	A	L	S	A	T	V	S	A	N	A	M	A	K	D	T	I	A	L	V	V	S	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V
Secondary structure
SS confidence
Disorder		?	?	?															?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A	N	Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F	N
Secondary structure
SS confidence
Disorder																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	L	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G	F	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Sequence		G	T	P	D	G	E	K	A	V	N	D	G	K	L	A	A	T	I	A	Q	L	P	D	Q	I	G	A	K	G	V	E	T	A	D	K	V	L	K	G	E	K	V	Q	A	K	Y	P	V	D	L	K	L	V	V	K	Q
Secondary structure
SS confidence
Disorder																																																						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2dri chain A Region: 26 - 296 Aligned: 271 Modelled: 271 Confidence: 100.0% Identity: 100% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 2ioy chain B Region: 27 - 296 Aligned: 270 Modelled: 270 Confidence: 100.0% Identity: 57% PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein Phyre2 PDB 1zvv chain A Region: 2 - 296 Aligned: 291 Modelled: 295 Confidence: 100.0% Identity: 16% PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex Phyre2 PDB 3l6u chain A Region: 27 - 294 Aligned: 268 Modelled: 268 Confidence: 100.0% Identity: 24% PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum Phyre2 PDB 2fn9 chain A Region: 27 - 296 Aligned: 270 Modelled: 270 Confidence: 100.0% Identity: 40% PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form Phyre2 PDB 1jx6 chain A Region: 5 - 296 Aligned: 292 Modelled: 292 Confidence: 100.0% Identity: 17% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 2iks chain A Region: 25 - 296 Aligned: 268 Modelled: 272 Confidence: 100.0% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 Phyre2 PDB 3l49 chain D Region: 23 - 296 Aligned: 272 Modelled: 274 Confidence: 100.0% Identity: 22% PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 Phyre2 PDB 3c3k chain A Region: 25 - 296 Aligned: 263 Modelled: 272 Confidence: 100.0% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes Phyre2 PDB 3h5o chain B Region: 27 - 296 Aligned: 263 Modelled: 269 Confidence: 100.0% Identity: 19% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum Phyre2 PDB 3k4h chain A Region: 25 - 296 Aligned: 268 Modelled: 272 Confidence: 100.0% Identity: 17% PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 Phyre2 PDB 3e3m chain A Region: 27 - 296 Aligned: 262 Modelled: 270 Confidence: 100.0% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi Phyre2 PDB 2nzu chain G domain 1 Region: 25 - 296 Aligned: 268 Modelled: 270 Confidence: 100.0% Identity: 16% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 3dbi chain A Region: 25 - 296 Aligned: 268 Modelled: 269 Confidence: 100.0% Identity: 19% PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate Phyre2 PDB 3miz chain B Region: 26 - 296 Aligned: 266 Modelled: 265 Confidence: 100.0% Identity: 16% PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli Phyre2 PDB 3kjx chain D Region: 2 - 296 Aligned: 291 Modelled: 292 Confidence: 100.0% Identity: 18% PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi Phyre2 PDB 1tlf chain A Region: 26 - 296 Aligned: 266 Modelled: 270 Confidence: 100.0% Identity: 21% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 3egc chain F Region: 25 - 294 Aligned: 261 Modelled: 266 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis Phyre2 PDB 1jye chain A Region: 29 - 296 Aligned: 263 Modelled: 267 Confidence: 100.0% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution Phyre2 PDB 1jye chain A Region: 29 - 296 Aligned: 263 Modelled: 267 Confidence: 100.0% Identity: 21% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 2hsg chain A domain 1 Region: 3 - 27 Aligned: 25 Modelled: 25 Confidence: 96.8% Identity: 16% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 1qpz chain A domain 1 Region: 2 - 27 Aligned: 26 Modelled: 26 Confidence: 96.8% Identity: 8% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 1efa chain A domain 1 Region: 4 - 28 Aligned: 25 Modelled: 25 Confidence: 96.7% Identity: 12% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 2bjc chain A domain 1 Region: 4 - 28 Aligned: 25 Modelled: 25 Confidence: 96.7% Identity: 12% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 PDB 1uxd chain A Region: 2 - 27 Aligned: 26 Modelled: 26 Confidence: 96.5% Identity: 12% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: GalR/LacI-like bacterial regulator Phyre2 1 d2dria_ 2 c2ioyB_ 3 c1zvvA_ 4 c3l6uA_ 5 c2fn9A_ 6 d1jx6a_ 7 c2iksA_ 8 c3l49D_ 9 c3c3kA_ 10 c3h5oB_ 11 c3k4hA_ 12 c3e3mA_ 13 d2nzug1 14 c3dbiA_ 15 c3mizB_ 16 c3kjxD_ 17 d1tlfa_ 18 c3egcF_ 19 c1jyeA_ 20 d1jyea_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 d2hsga1 97 d1qpza1 98 d1efaa1 99 d2bjca1 100 d1uxda_ 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2dria_ 100.0 100 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 2 c2ioyB_ 100.0 57 PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein 3 c1zvvA_ 100.0 16 PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex 4 c3l6uA_ 100.0 24 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum 5 c2fn9A_ 100.0 40 PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form 6 d1jx6a_ 100.0 17 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 7 c2iksA_ 100.0 16 PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 8 c3l49D_ 100.0 22 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 9 c3c3kA_ 100.0 20 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes 10 c3h5oB_ 100.0 19 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 11 c3k4hA_ 100.0 17 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 12 c3e3mA_ 100.0 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 13 d2nzug1 100.0 16 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 14 c3dbiA_ 100.0 19 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate 15 c3mizB_ 100.0 16 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli 16 c3kjxD_ 100.0 18 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi 17 d1tlfa_ 100.0 21 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 18 c3egcF_ 100.0 19 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis 19 c1jyeA_ 100.0 21 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 20 d1jyea_ 100.0 21 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 21 c3ctpB_ not modelled 100.0 23 PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose 22 c3cs3A_ not modelled 100.0 16 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 23 c1bdhA_ not modelled 100.0 19 PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex 24 c3d8uA_ not modelled 100.0 16 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 25 c3brsA_ not modelled 100.0 23 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans 26 c3brqA_ not modelled 100.0 19 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 27 c2rgyA_ not modelled 100.0 18 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 28 c3kkeA_ not modelled 100.0 19 PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis 29 c3ma0A_ not modelled 100.0 21 PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli 30 c3hcwB_ not modelled 100.0 14 PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus 31 c2rjoA_ not modelled 100.0 26 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 32 c3ksmA_ not modelled 100.0 23 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 33 c3o74A_ not modelled 100.0 17 PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida 34 c2o20H_ not modelled 100.0 14 PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis 35 d1guda_ not modelled 100.0 35 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 36 d1dbqa_ not modelled 100.0 22 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 37 c3g85A_ not modelled 100.0 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum 38 c3qk7C_ not modelled 100.0 18 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 39 c3k9cA_ not modelled 100.0 22 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species. 40 c3gv0A_ not modelled 100.0 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens 41 c3hs3A_ not modelled 100.0 18 PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus 42 d1gcaa_ not modelled 100.0 25 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 43 c3bblA_ not modelled 100.0 13 PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans 44 c3g1wB_ not modelled 100.0 17 PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans 45 c3jy6B_ not modelled 100.0 21 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis 46 c2qvcC_ not modelled 100.0 25 PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima 47 c3gbvB_ not modelled 100.0 17 PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis 48 d8abpa_ not modelled 100.0 20 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 49 c2qu7B_ not modelled 100.0 22 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus 50 d2fvya1 not modelled 100.0 25 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 51 c3o1hB_ not modelled 100.0 18 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 52 c2h0aA_ not modelled 100.0 21 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus 53 c3huuC_ not modelled 100.0 14 PDB header:transcription regulator Chain: C: PDB Molecule:transcription regulator like protein; PDBTitle: crystal structure of transcription regulator like protein from2 staphylococcus haemolyticus 54 d1byka_ not modelled 100.0 16 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 55 c3bilA_ not modelled 100.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum 56 c3d02A_ not modelled 100.0 19 PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution 57 c2x7xA_ not modelled 100.0 26 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: fructose binding periplasmic domain of hybrid two component2 system bt1754 58 c3clkB_ not modelled 100.0 16 PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum 59 c3jvdA_ not modelled 100.0 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum 60 d1tjya_ not modelled 100.0 19 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 61 c3gybB_ not modelled 100.0 24 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum 62 c3h5tA_ not modelled 100.0 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum 63 c3rotA_ not modelled 100.0 18 PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila 64 c2vk2A_ not modelled 100.0 25 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 65 c3h75A_ not modelled 100.0 21 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 66 c3e61A_ not modelled 100.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus 67 c2hqbA_ not modelled 99.9 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans 68 c3lftA_ not modelled 99.8 14 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a 69 c2qh8A_ not modelled 99.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 70 c2fqxA_ not modelled 99.8 13 PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine 71 c3s99A_ not modelled 99.5 12 PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak 72 c3sg0A_ not modelled 98.6 16 PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 73 c3i09A_ not modelled 98.5 15 PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution 74 c3hutA_ not modelled 98.5 13 PDB header:transport protein Chain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum 75 c3snrA_ not modelled 98.4 14 PDB header:transport protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris. 76 c3n0wA_ not modelled 98.3 10 PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution 77 c3t0nA_ not modelled 98.3 17 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal; PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5 78 d1qo0a_ not modelled 98.2 13 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 79 c3lopA_ not modelled 98.1 15 PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum 80 d3ckma1 not modelled 98.1 9 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 81 c3qi7A_ not modelled 98.0 12 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 82 c3i45A_ not modelled 98.0 13 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of putative twin-arginine translocation pathway2 signal protein from rhodospirillum rubrum atcc 11170 83 d2liva_ not modelled 98.0 16 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 84 c3h5lB_ not modelled 97.9 12 PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi 85 c3ip5A_ not modelled 97.9 16 PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine 86 c3n0xA_ not modelled 97.8 16 PDB header:transport protein Chain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution 87 c3eafA_ not modelled 97.6 12 PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix 88 d1usga_ not modelled 97.6 16 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 89 c3td9A_ not modelled 97.6 13 PDB header:transport protein Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution 90 c3lkbB_ not modelled 97.6 12 PDB header:transport protein Chain: B: PDB Molecule:probable branched-chain amino acid abc PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine 91 d1jdpa_ not modelled 97.2 9 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 92 c1jdpA_ not modelled 97.2 9 PDB header:signaling protein Chain: A: PDB Molecule:atrial natriuretic peptide clearance receptor; PDBTitle: crystal structure of hormone/receptor complex 93 c3q41B_ not modelled 97.2 11 PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) 94 c3sajB_ not modelled 97.0 9 PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain 95 c3sm9A_ not modelled 96.9 14 PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 3; PDBTitle: crystal structure of metabotropic glutamate receptor 3 precursor in2 presence of ly341495 antagonist 96 d2hsga1 96.8 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 97 d1qpza1 96.8 8 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 98 d1efaa1 96.7 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 99 d2bjca1 96.7 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 100 d1uxda_ 96.5 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 101 c1yk1B_ not modelled 96.2 10 PDB header:hormone/growth factor receptor Chain: B: PDB Molecule:atrial natriuretic peptide clearance receptor; PDBTitle: structure of natriuretic peptide receptor-c complexed with brain2 natriuretic peptide 102 c3h6hB_ not modelled 96.0 13 PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form 103 d1dp4a_ not modelled 94.7 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 104 d1ewka_ not modelled 94.4 15 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 105 c3p3wC_ not modelled 93.5 8 PDB header:transport protein Chain: C: PDB Molecule:glutamate receptor 3; PDBTitle: structure of a dimeric glua3 n-terminal domain (ntd) at 4.2 a2 resolution 106 d1uxca_ not modelled 91.7 13 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 107 c2e4wA_ not modelled 90.5 12 PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 3; PDBTitle: crystal structure of the extracellular region of the group ii2 metabotropic glutamate receptor complexed with 1s,3s-acpd 108 d1lcda_ not modelled 90.2 6 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 109 c3om1A_ not modelled 89.9 9 PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution 110 c2e4zA_ not modelled 88.2 16 PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 7; PDBTitle: crystal structure of the ligand-binding region of the group iii2 metabotropic glutamate receptor 111 c2l8nA_ not modelled 87.3 6 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna 112 c2lcvA_ not modelled 86.6 7 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 113 c2f59B_ not modelled 85.1 13 PDB header:transferase Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 114 c3kg2A_ not modelled 85.0 9 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775 115 c3mk3L_ not modelled 84.9 16 PDB header:transferase Chain: L: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase; PDBTitle: crystal structure of lumazine synthase from salmonella typhimurium lt2 116 d1di0a_ not modelled 84.8 8 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 117 d1c2ya_ not modelled 84.5 13 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 118 d1rvv1_ not modelled 84.3 13 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 119 d1nqua_ not modelled 83.6 10 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 120 c2obxH_ not modelled 82.5 15 PDB header:transferase Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0