Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	V	T	A	M	L	F	S	M	A	V	G	L	N	A	V	S	M	A	A	K	A	K	A	S	E	E	Q	E	T	D	V	L	L	I	G	G	G	I	M	S	A	T	L	G	T	Y	L	R	E	L	E	P	E	W	S	M	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	V	E	R	L	E	G	V	A	Q	E	S	S	N	G	W	N	N	A	G	T	G	H	S	A	L	M	E	L	N	Y	T	P	Q	N	A	D	G	S	I	S	I	E	K	A	V	A	I	N	E	A	F	Q	I	S	R	Q	F	W	A
Secondary structure
SS confidence
Disorder									?		?	?	?	?			?																			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	Q	V	E	R	G	V	L	R	T	P	R	S	F	I	N	T	V	P	H	M	S	F	V	W	G	E	D	N	V	N	F	L	R	A	R	Y	A	A	L	Q	Q	S	S	L	F	R	G	M	R	Y	S	E	D	H	A	Q	I	K	E
Secondary structure
SS confidence
Disorder																																											?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		W	A	P	L	V	M	E	G	R	D	P	Q	Q	K	V	A	A	T	R	T	E	I	G	T	D	V	N	Y	G	E	I	T	R	Q	L	I	A	S	L	Q	K	K	S	N	F	S	L	Q	L	S	S	E	V	R	A	L	K	R	N	D
Secondary structure
SS confidence
Disorder											?																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	N	T	W	T	V	T	V	A	D	L	K	N	G	T	A	Q	N	I	R	A	K	F	V	F	I	G	A	G	G	A	A	L	K	L	L	Q	E	S	G	I	P	E	A	K	D	Y	A	G	F	P	V	G	G	Q	F	L	V	S	E
Secondary structure
SS confidence
Disorder																	?																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	P	D	V	V	N	H	H	L	A	K	V	Y	G	K	A	S	V	G	A	P	P	M	S	V	P	H	I	D	T	R	V	L	D	G	K	R	V	V	L	F	G	P	F	A	T	F	S	T	K	F	L	K	N	G	S	L	W	D	L
Secondary structure
SS confidence
Disorder						?	?	?	?			?							?	?	?	?																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		M	S	S	T	T	T	S	N	V	M	P	M	M	H	V	G	L	D	N	F	D	L	V	K	Y	L	V	S	Q	V	M	L	S	E	E	D	R	F	E	A	L	K	E	Y	Y	P	Q	A	K	K	E	D	W	R	L	W	Q	A	G	Q
Secondary structure
SS confidence
Disorder					?																									?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		R	V	Q	I	I	K	R	D	A	E	K	G	G	V	L	R	L	G	T	E	V	V	S	D	Q	Q	G	T	I	A	A	L	L	G	A	S	P	G	A	S	T	A	A	P	I	M	L	N	L	L	E	K	V	F	G	D	R	V	S	S
Secondary structure
SS confidence
Disorder																?	?	?	?		?	?	?	?	?																																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		P	Q	W	Q	A	T	L	K	A	I	V	P	S	Y	G	R	K	L	N	G	D	V	A	A	T	E	R	E	L	Q	Y	T	S	E	V	L	G	L	N	Y	D	K	P	Q	A	A	D	S	T	P	K	P	Q	L	K	P	Q	P	V	Q
Secondary structure
SS confidence
Disorder		?	?																																?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		K	E	V	A	D	I	A	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2rgo chain A Region: 15 - 519 Aligned: 439 Modelled: 454 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase Phyre2 PDB 2rgh chain A Region: 14 - 522 Aligned: 429 Modelled: 437 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase Phyre2 PDB 3da1 chain A Region: 14 - 514 Aligned: 373 Modelled: 398 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167. Phyre2 PDB 2r4j chain A Region: 30 - 512 Aligned: 399 Modelled: 429 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap Phyre2 PDB 3dme chain B Region: 31 - 473 Aligned: 362 Modelled: 388 Confidence: 100.0% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141 Phyre2 PDB 1pj6 chain A Region: 30 - 422 Aligned: 333 Modelled: 353 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:n,n-dimethylglycine oxidase; PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid Phyre2 PDB 2gah chain B Region: 19 - 474 Aligned: 364 Modelled: 393 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit; PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution Phyre2 PDB 3pvc chain A Region: 25 - 476 Aligned: 363 Modelled: 403 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Phyre2 PDB 3ps9 chain A Region: 25 - 476 Aligned: 354 Modelled: 391 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli Phyre2 PDB 3dje chain A Region: 27 - 473 Aligned: 376 Modelled: 414 Confidence: 100.0% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase; PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa Phyre2 PDB 1y56 chain B Region: 29 - 474 Aligned: 351 Modelled: 388 Confidence: 99.9% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:sarcosine oxidase; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii Phyre2 PDB 2oln chain A Region: 30 - 473 Aligned: 366 Modelled: 402 Confidence: 99.9% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:nikd protein; PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution Phyre2 PDB 3nye chain A Region: 23 - 473 Aligned: 355 Modelled: 389 Confidence: 99.9% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine Phyre2 PDB 1pj5 chain A domain 2 Region: 31 - 306 Aligned: 230 Modelled: 259 Confidence: 99.9% Identity: 18% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD-linked reductases, N-terminal domain Phyre2 PDB 3bhk chain A Region: 31 - 475 Aligned: 359 Modelled: 396 Confidence: 99.9% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:monomeric sarcosine oxidase; PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant Phyre2 PDB 1ryi chain A domain 1 Region: 30 - 296 Aligned: 225 Modelled: 266 Confidence: 99.9% Identity: 14% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD-linked reductases, N-terminal domain Phyre2 PDB 2uzz chain D Region: 31 - 473 Aligned: 351 Modelled: 392 Confidence: 99.9% Identity: 15% PDB header:oxidoreductase Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase; PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox) Phyre2 PDB 2gf3 chain A domain 1 Region: 29 - 290 Aligned: 223 Modelled: 242 Confidence: 99.9% Identity: 13% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD-linked reductases, N-terminal domain Phyre2 PDB 1ryi chain B Region: 29 - 473 Aligned: 345 Modelled: 390 Confidence: 99.9% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:glycine oxidase; PDBTitle: structure of glycine oxidase with bound inhibitor glycolate Phyre2 PDB 2jbv chain A Region: 23 - 328 Aligned: 279 Modelled: 291 Confidence: 99.8% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:choline oxidase; PDBTitle: crystal structure of choline oxidase reveals insights into2 the catalytic mechanism Phyre2 1 c2rgoA_ 2 c2rghA_ 3 c3da1A_ 4 c2r4jA_ 5 c3dmeB_ 6 c1pj6A_ 7 c2gahB_ 8 c3pvcA_ 9 c3ps9A_ 10 c3djeA_ 11 c1y56B_ 12 c2olnA_ 13 c3nyeA_ 14 d1pj5a2 15 c3bhkA_ 16 d1ryia1 17 c2uzzD_ 18 d2gf3a1 19 c1ryiB_ 20 c2jbvA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499