PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3nyeA_

Fold library id	PDB Header	Molecule	Title
c3nyeA_	PDB header: oxidoreductase	Chain: A: PDB Molecule: d-arginine dehydrogenase;	PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine

Links to external resources
Added to library: Sat Sep 18 09:31:00 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H H H H H H P I E A D Y L V I G A G I A G A S T G Y W L S A H G R V V V L E R E A Q P G Y H S T G R S A A H Y T V A Y G T P Q V R A L T A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T S
S S S S T T S S G G G S S
S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S R A F F D N P P A G F C E H P L L S P R P E M V V D F S D D P E E L R R Q Y E S G K A L V P Q M R L L D A E Q A C S I V P V L R R D K V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
S S
S
S S
T T
S T T B
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G A T Y D P T G A D I D T D A L H Q G Y L R G I R R N Q G Q V L C N H E A L E I R R V D G A W E V R C D A G S Y R A A V L V N A A G A W C D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S
T T
S S
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A I A G L A G V R P L G L Q P K R R S A F I F A P P P G I D C H D W P M L V S L D E S F Y L K P D A G M L L G S P A N A D P V E A H D V Q P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
T T S S
T T
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence E Q L D I A T G M Y L I E E A T T L T I R R P E H T W A G L R S F V A D G D L V A G Y A A N A E G F F W V A A Q G G Y G I Q T S A A M G E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S
S
T T S
T T S T T
T T
T T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 .

Sequence S A A L I R H Q P L P A H L R E H G L D E A M L S P R R L S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	H	H	H	H	H	P	I	E	A	D	Y	L	V	I	G	A	G	I	A	G	A	S	T	G	Y	W	L	S	A	H	G	R	V	V	V	L	E	R	E	A	Q	P	G	Y	H	S	T	G	R	S	A	A	H	Y	T	V	A	Y	G	T	P	Q	V	R	A	L	T	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S											T	T	T	S							S	S	S	S	T	T	S	S	G	G	G	S	S						S	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	R	A	F	F	D	N	P	P	A	G	F	C	E	H	P	L	L	S	P	R	P	E	M	V	V	D	F	S	D	D	P	E	E	L	R	R	Q	Y	E	S	G	K	A	L	V	P	Q	M	R	L	L	D	A	E	Q	A	C	S	I	V	P	V	L	R	R	D	K	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S			T	T	S		S	S		S											S	S																		T	T													S	T	T	B		G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	A	T	Y	D	P	T	G	A	D	I	D	T	D	A	L	H	Q	G	Y	L	R	G	I	R	R	N	Q	G	Q	V	L	C	N	H	E	A	L	E	I	R	R	V	D	G	A	W	E	V	R	C	D	A	G	S	Y	R	A	A	V	L	V	N	A	A	G	A	W	C	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T																				T	T					S	S										T	T							S	S													G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	I	A	G	L	A	G	V	R	P	L	G	L	Q	P	K	R	R	S	A	F	I	F	A	P	P	P	G	I	D	C	H	D	W	P	M	L	V	S	L	D	E	S	F	Y	L	K	P	D	A	G	M	L	L	G	S	P	A	N	A	D	P	V	E	A	H	D	V	Q	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T																				T	T				T	T							T	T	S	S							T	T														S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	E	Q	L	D	I	A	T	G	M	Y	L	I	E	E	A	T	T	L	T	I	R	R	P	E	H	T	W	A	G	L	R	S	F	V	A	D	G	D	L	V	A	G	Y	A	A	N	A	E	G	F	F	W	V	A	A	Q	G	G	Y	G	I	Q	T	S	A	A	M	G	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																B	S							S											T	T	S								T	T	S	T	T								T	T		T	T	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Sequence	S	A	A	L	I	R	H	Q	P	L	P	A	H	L	R	E	H	G	L	D	E	A	M	L	S	P	R	R	L	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T										T	T								G	G	G	G