Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP37624
DateThu Jan 5 11:55:58 GMT 2012
Unique Job ID797533507efad6a0

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3g5uB_
Top template information
PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
Confidence and coverage
Confidence:100.0% Coverage: 52%
478 residues ( 52% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
627 residues ( 69%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISG
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Disorder  ?????????
















































??
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   .........70.........80.........90.........100.........110.........120
Sequence  ARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHD
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????



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   .........130.........140.........150.........160.........170.........180
Sequence  KAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDP
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???



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   .........190.........200.........210.........220.........230.........240
Sequence  LSRSQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWLVAMNAGEVLATGSAEELRQQTQ
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   .........250.........260.........270.........280.........290.........300
Sequence  SATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIAIEARDLTMRFGSFVAVDHVNFRIP
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???

??








?
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   .........310.........320.........330.........340.........350.........360
Sequence  RGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDPKDIDTRRRVGYMSQAFSL
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???




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   .........370.........380.........390.........400.........410.........420
Sequence  YNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPESLPLGIRQRLSLAV
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   .........430.........440.........450.........460.........470.........480
Sequence  AVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAERCDRISLM
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   .........490.........500.........510.........520.........530.........540
Sequence  HAGKVLASGTPQELVEKRGAASLEEAFIAYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSL
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?

???????????????????

??
?????
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   .........550.........560.........570.........580.........590.........600
Sequence  RRLFSYSRREALELRRDPVRSTLALMGTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQ
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   .........610.........620.........630.........640.........650.........660
Sequence  AWTLNLSGSRYFIEQPPLTSYDELDRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWID
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   .........670.........680.........690.........700.........710.........720
Sequence  GAMPSRAETVKGYVQAMHQSWLQDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPA
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?




















???????????????


















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   .........730.........740.........750.........760.........770.........780
Sequence  VIPLLLMMIPSMLSALSVVREKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLC
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??












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   .........790.........800.........810.........820.........830.........840
Sequence  GLSVFVFGVPHKGSFLTLTLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQ
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   .........850.........860.........870.........880.........890.........900
Sequence  FSGMIDPVASLEGPGRWIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMG
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   .........910.
Sequence  LSILLLKKQEG
Secondary structure 

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Disorder 






????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3g5u chain B

3D model

Region: 2 - 499
Aligned: 478
Modelled: 478
Confidence: 100.0%
Identity: 24%
PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding

Phyre2

PDB 1yqt chain A

3D model

Region: 16 - 489
Aligned: 448
Modelled: 462
Confidence: 100.0%
Identity: 19%
PDB header:hydrolyase/translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: rnase-l inhibitor

Phyre2

PDB 3bk7 chain A

3D model

Region: 13 - 496
Aligned: 455
Modelled: 482
Confidence: 100.0%
Identity: 20%
PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii

Phyre2

PDB 3ozx chain A

3D model

Region: 16 - 493
Aligned: 446
Modelled: 467
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase, translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)

Phyre2

PDB 2iw3 chain B

3D model

Region: 5 - 490
Aligned: 441
Modelled: 471
Confidence: 100.0%
Identity: 22%
PDB header:translation
Chain: B: PDB Molecule:elongation factor 3a;
PDBTitle: elongation factor 3 in complex with adp

Phyre2

PDB 2ygr chain D

3D model

Region: 16 - 500
Aligned: 462
Modelled: 485
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: D: PDB Molecule:uvrabc system protein a;
PDBTitle: mycobacterium tuberculosis uvra

Phyre2

PDB 3pih chain A

3D model

Region: 16 - 502
Aligned: 462
Modelled: 487
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna

Phyre2

PDB 2r6f chain A

3D model

Region: 12 - 523
Aligned: 488
Modelled: 506
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:excinuclease abc subunit a;
PDBTitle: crystal structure of bacillus stearothermophilus uvra

Phyre2

PDB 2vf7 chain B

3D model

Region: 45 - 502
Aligned: 426
Modelled: 446
Confidence: 100.0%
Identity: 24%
PDB header:dna-binding protein
Chain: B: PDB Molecule:excinuclease abc, subunit a.;
PDBTitle: crystal structure of uvra2 from deinococcus radiodurans

Phyre2

PDB 2yyz chain A

3D model

Region: 275 - 507
Aligned: 232
Modelled: 233
Confidence: 100.0%
Identity: 31%
PDB header:transport protein
Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein;
PDBTitle: crystal structure of sugar abc transporter, atp-binding protein

Phyre2

PDB 2it1 chain B

3D model

Region: 276 - 498
Aligned: 222
Modelled: 223
Confidence: 100.0%
Identity: 30%
PDB header:transport protein
Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin
PDBTitle: structure of ph0203 protein from pyrococcus horikoshii

Phyre2

PDB 3fvq chain B

3D model

Region: 274 - 507
Aligned: 234
Modelled: 233
Confidence: 100.0%
Identity: 27%
PDB header:hydrolase
Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc;
PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp

Phyre2

PDB 1oxt chain B

3D model

Region: 13 - 318
Aligned: 303
Modelled: 306
Confidence: 100.0%
Identity: 22%
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, atp binding protein;
PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus

Phyre2

PDB 1vpl chain A

3D model

Region: 276 - 512
Aligned: 236
Modelled: 237
Confidence: 100.0%
Identity: 31%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 1z47 chain B

3D model

Region: 276 - 507
Aligned: 231
Modelled: 232
Confidence: 100.0%
Identity: 32%
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius

Phyre2

PDB 2olk chain D

3D model

Region: 276 - 507
Aligned: 231
Modelled: 232
Confidence: 100.0%
Identity: 30%
PDB header:hydrolase
Chain: D: PDB Molecule:amino acid abc transporter;
PDBTitle: abc protein artp in complex with adp-beta-s

Phyre2

PDB 1g29 chain 1 domain 2

3D model

Region: 276 - 499
Aligned: 224
Modelled: 224
Confidence: 100.0%
Identity: 31%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 1q1b chain D

3D model

Region: 277 - 507
Aligned: 230
Modelled: 231
Confidence: 100.0%
Identity: 28%
PDB header:transport protein
Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk;
PDBTitle: crystal structure of e. coli malk in the nucleotide-free form

Phyre2

PDB 3dhw chain C domain 1

3D model

Region: 276 - 501
Aligned: 226
Modelled: 226
Confidence: 100.0%
Identity: 30%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 1oxx chain K domain 2

3D model

Region: 277 - 498
Aligned: 222
Modelled: 222
Confidence: 100.0%
Identity: 31%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 3cni chain A

3D model

Region: 587 - 726
Aligned: 136
Modelled: 131
Confidence: 99.4%
Identity: 12%
PDB header:transport protein
Chain: A: PDB Molecule:putative abc type-2 transporter;
PDBTitle: crystal structure of a domain of a putative abc type-2 transporter2 from thermotoga maritima msb8

Phyre2
1

c3g5uB_
2

c1yqtA_
3

c3bk7A_
4

c3ozxA_
5

c2iw3B_
6

c2ygrD_
7

c3pihA_
8

c2r6fA_
9

c2vf7B_
10

c2yyzA_
11

c2it1B_
12

c3fvqB_
13

c1oxtB_
14

d1vpla_
15

c1z47B_
16

c2olkD_
17

d1g2912
18

c1q1bD_
19

d3dhwc1
20

d1oxxk2
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3g5uB_



100.0 24 PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
2c1yqtA_



100.0 19 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: rnase-l inhibitor
3c3bk7A_



100.0 20 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
4c3ozxA_



100.0 20 PDB header:hydrolase, translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
5c2iw3B_



100.0 22 PDB header:translation
Chain: B: PDB Molecule:elongation factor 3a;
PDBTitle: elongation factor 3 in complex with adp
6c2ygrD_



100.0 25 PDB header:hydrolase
Chain: D: PDB Molecule:uvrabc system protein a;
PDBTitle: mycobacterium tuberculosis uvra
7c3pihA_



100.0 26 PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
8c2r6fA_



100.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:excinuclease abc subunit a;
PDBTitle: crystal structure of bacillus stearothermophilus uvra
9c2vf7B_



100.0 24 PDB header:dna-binding protein
Chain: B: PDB Molecule:excinuclease abc, subunit a.;
PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
10c2yyzA_



100.0 31 PDB header:transport protein
Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein;
PDBTitle: crystal structure of sugar abc transporter, atp-binding protein
11c2it1B_



100.0 30 PDB header:transport protein
Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin
PDBTitle: structure of ph0203 protein from pyrococcus horikoshii
12c3fvqB_



100.0 27 PDB header:hydrolase
Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc;
PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp
13c1oxtB_



100.0 22 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, atp binding protein;
PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus
14d1vpla_



100.0 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
15c1z47B_



100.0 32 PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
16c2olkD_



100.0 30 PDB header:hydrolase
Chain: D: PDB Molecule:amino acid abc transporter;
PDBTitle: abc protein artp in complex with adp-beta-s
17d1g2912



100.0 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
18c1q1bD_



100.0 28 PDB header:transport protein
Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk;
PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
19d3dhwc1



100.0 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
20d1oxxk2



100.0 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
21c2d62A_



not modelled 100.0 31 PDB header:sugar binding protein
Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding
PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein
22c3dhwC_



not modelled 100.0 30 PDB header:membrane protein/hydrolase
Chain: C: PDB Molecule:methionine import atp-binding protein metn;
PDBTitle: crystal structure of methionine importer metni
23c3gfoA_



not modelled 100.0 25 PDB header:atp binding protein
Chain: A: PDB Molecule:cobalt import atp-binding protein cbio 1;
PDBTitle: structure of cbio1 from clostridium perfringens: part of2 the abc transporter complex cbionq.
24c1vciA_



not modelled 100.0 33 PDB header:transport protein
Chain: A: PDB Molecule:sugar-binding transport atp-binding protein;
PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp
25d3d31a2



not modelled 100.0 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
26c2pcjB_



not modelled 100.0 25 PDB header:hydrolase
Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold;
PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5
27d1v43a3



not modelled 100.0 33 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
28d1b0ua_



not modelled 100.0 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
29c3d31B_



not modelled 100.0 29 PDB header:transport protein
Chain: B: PDB Molecule:sulfate/molybdate abc transporter, atp-binding
PDBTitle: modbc from methanosarcina acetivorans
30d1g6ha_



not modelled 100.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
31c2hydB_



not modelled 100.0 26 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter homolog;
PDBTitle: multidrug abc transporter sav1866
32c2yl4A_



not modelled 100.0 21 PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10
33d1ji0a_



not modelled 100.0 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
34d1jj7a_



not modelled 100.0 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
35d2pmka1



not modelled 100.0 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
36c3nhaA_



not modelled 100.0 20 PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 6, mitochondrial;
PDBTitle: nucleotide binding domain of human abcb6 (adp mg bound structure)
37d1l2ta_



not modelled 100.0 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
38c2yz2B_



not modelled 100.0 23 PDB header:hydrolase
Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222;
PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system
39d3b60a1



not modelled 100.0 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
40c3b5xB_



not modelled 100.0 25 PDB header:membrane protein
Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of msba from vibrio cholerae
41c2d2fA_



not modelled 100.0 19 PDB header:protein binding
Chain: A: PDB Molecule:sufc protein;
PDBTitle: crystal structure of atypical cytoplasmic abc-atpase sufc from thermus2 thermophilus hb8
42c2nq2C_



not modelled 100.0 25 PDB header:metal transport
Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
43d1mv5a_



not modelled 100.0 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
44c3b5wE_



not modelled 100.0 28 PDB header:membrane protein
Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of eschericia coli msba
45d2hyda1



not modelled 100.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
46d2onka1



not modelled 100.0 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
47c3gd7C_



not modelled 100.0 17 PDB header:hydrolase
Chain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane
PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
48c2ihyB_



not modelled 100.0 21 PDB header:hydrolase
Chain: B: PDB Molecule:abc transporter, atp-binding protein;
PDBTitle: structure of the staphylococcus aureus putative atpase subunit of an2 atp-binding cassette (abc) transporter
49c2cbzA_



not modelled 100.0 25 PDB header:transport
Chain: A: PDB Molecule:multidrug resistance-associated protein 1;
PDBTitle: structure of the human multidrug resistance protein 12 nucleotide binding domain 1
50c2d3wB_



not modelled 100.0 19 PDB header:biosynthetic protein
Chain: B: PDB Molecule:probable atp-dependent transporter sufc;
PDBTitle: crystal structure of escherichia coli sufc, an atpase2 compenent of the suf iron-sulfur cluster assembly machinery
51d1pf4a1



not modelled 100.0 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
52c2pzfB_



not modelled 100.0 26 PDB header:hydrolase
Chain: B: PDB Molecule:cystic fibrosis transmembrane conductance regulator;
PDBTitle: minimal human cftr first nucleotide binding domain as a head-to-tail2 dimer with delta f508
53c2ghiD_



not modelled 100.0 27 PDB header:transport protein
Chain: D: PDB Molecule:transport protein;
PDBTitle: crystal structure of plasmodium yoelii multidrug resistance2 protein 2
54d1xmia_



not modelled 100.0 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
55d1sgwa_



not modelled 100.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
56c2pjzA_



not modelled 100.0 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein st1066;
PDBTitle: the crystal structure of putative cobalt transport atp-2 binding protein (cbio-2), st1066
57d1r0wa_



not modelled 100.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
58d2awna2



not modelled 100.0 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
59d1l7vc_



not modelled 100.0 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
60c1u9iA_



not modelled 100.0 14 PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
61d1cr2a_



not modelled 99.9 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
62d1w1wa_



not modelled 99.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
63c3tauB_



not modelled 99.8 12 PDB header:transferase
Chain: B: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of a putative guanylate monophosphaste kinase from2 listeria monocytogenes egd-e
64c2j41A_



not modelled 99.8 13 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of staphylococcus aureus guanylate2 monophosphate kinase
65c1xexB_



not modelled 99.7 17 PDB header:cell cycle
Chain: B: PDB Molecule:smc protein;
PDBTitle: structural biochemistry of atp-driven dimerization and dna2 stimulated activation of smc atpases.
66c3a4mB_



not modelled 99.7 13 PDB header:transferase
Chain: B: PDB Molecule:l-seryl-trna(sec) kinase;
PDBTitle: crystal structure of archaeal o-phosphoseryl-trna(sec)2 kinase
67c1f2uD_



not modelled 99.7 22 PDB header:replication
Chain: D: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of rad50 abc-atpase
68d2qy9a2



not modelled 99.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
69d1ls1a2



not modelled 99.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
70c2o5vA_



not modelled 99.6 20 PDB header:replication/recombination
Chain: A: PDB Molecule:dna replication and repair protein recf;
PDBTitle: recombination mediator recf
71d1vmaa2



not modelled 99.5 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
72c1ii8B_



not modelled 99.5 26 PDB header:replication
Chain: B: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of the p. furiosus rad50 atpase domain
73c3cmvG_



not modelled 99.4 15 PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
74c3cniA_



99.4 12 PDB header:transport protein
Chain: A: PDB Molecule:putative abc type-2 transporter;
PDBTitle: crystal structure of a domain of a putative abc type-2 transporter2 from thermotoga maritima msb8
75c3geiB_



not modelled 99.4 11 PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
76d1okkd2



not modelled 99.3 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
77c3lncB_



not modelled 99.3 12 PDB header:transferase
Chain: B: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of guanylate kinase from anaplasma2 phagocytophilum
78c1q57G_



not modelled 99.2 11 PDB header:transferase
Chain: G: PDB Molecule:dna primase/helicase;
PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7
79d1np6a_



not modelled 99.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
80d1ye8a1



not modelled 99.2 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
81d1e69a_



not modelled 99.1 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
82d1qzxa3



not modelled 98.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
83d2i3ba1



not modelled 98.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
84c3auyB_



not modelled 98.7 21 PDB header:recombination
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: crystal structure of rad50 bound to adp
85c2dr3A_



not modelled 98.7 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0273 protein ph0284;
PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
86c1wxqA_



not modelled 98.7 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3
87c2w0mA_



not modelled 98.6 12 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
88d1nlfa_



not modelled 98.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
89d1ewqa2



not modelled 98.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
90c2o8dB_



not modelled 98.5 16 PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna mismatch repair protein msh6;
PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair
91c3thxB_



not modelled 98.5 18 PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna mismatch repair protein msh3;
PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp
92d1wb9a2



not modelled 98.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
93c2o8bA_



not modelled 98.4 15 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna mismatch repair protein msh2;
PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair
94d1tf7a1



not modelled 98.2 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
95c1wbdA_



not modelled 98.2 16 PDB header:dna-binding
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of e. coli dna mismatch repair enzyme2 muts, e38q mutant, in complex with a g.t mismatch
96c1ewqA_



not modelled 98.2 22 PDB header:replication/dna
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution
97c1ewrA_



not modelled 98.2 18 PDB header:hydrolase
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of taq muts
98d1yrba1



not modelled 98.1 9 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
99c3qg5A_



not modelled 98.1 28 PDB header:hydrolase
Chain: A: PDB Molecule:rad50;
PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair
100c3cf1C_



not modelled 98.1 19 PDB header:transport protein
Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: structure of p97/vcp in complex with adp/adp.alfx
101c3bh0A_



not modelled 98.0 9 PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
102c3qkuB_



not modelled 98.0 28 PDB header:replication
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: mre11 rad50 binding domain in complex with rad50 and amp-pnp
103c2vyeA_



not modelled 97.9 12 PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
104c2recB_



not modelled 97.9 19 PDB header:helicase
PDB COMPND:
105c1pznG_



not modelled 97.9 11 PDB header:recombination
Chain: G: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
106d1xp8a1



not modelled 97.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
107c1mkyA_



not modelled 97.9 21 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
108d1tf7a2



not modelled 97.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
109d1mo6a1



not modelled 97.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
110c1us8A_



not modelled 97.8 28 PDB header:dna repair
Chain: A: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: the rad50 signature motif: essential to atp binding and2 biological function
111d2i1qa2



not modelled 97.8 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
112c1xp8A_



not modelled 97.7 18 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
113c1ii8A_



not modelled 97.7 28 PDB header:replication
Chain: A: PDB Molecule:rad50 abc-atpase;
PDBTitle: crystal structure of the p. furiosus rad50 atpase domain
114c2hjgA_



not modelled 97.7 17 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
115d1ubea1



not modelled 97.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
116d1qhla_



not modelled 97.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
117d1zp6a1



not modelled 97.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Atu3015-like
118d1n0wa_



not modelled 97.6 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
119c3ldaA_



not modelled 97.6 16 PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: yeast rad51 h352y filament interface mutant
120d1znwa1



not modelled 97.5 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0