Email l.a.kelley@imperial.ac.uk Description P21189 Date Thu Jan 5 11:38:01 GMT 2012 Unique Job ID 6b5e9bca3885544a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1q8iA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:dna polymerase ii; PDBTitle: crystal structure of escherichia coli dna polymerase ii 2 c3iayA_ 100.0 22 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: ternary complex of dna polymerase delta 3 c2gv9B_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase 4 c2vwkA_ 100.0 25 PDB header:dna replication Chain: A: PDB Molecule:dna polymerase; PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant 5 c1d5aA_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase); PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom 6 c2dtuA_ 100.0 20 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog 7 c1s5jA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:dna polymerase i; PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus 8 d1tgoa2 100.0 29 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 9 d1ih7a2 100.0 22 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 10 d1wn7a2 100.0 29 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 11 d1d5aa2 100.0 29 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 12 d1qhta2 100.0 29 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 13 d1q8ia2 100.0 100 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 14 d1q8ia1 100.0 100 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 15 d1s5ja2 100.0 23 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 16 d1qhta1 100.0 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 17 d1tgoa1 100.0 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 18 d1wn7a1 100.0 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 19 d1d5aa1 100.0 21 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 20 d1s5ja1 100.0 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 21 d1ih7a1 not modelled 100.0 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 22 d1noya_ not modelled 100.0 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 23 c2ex3I_ not modelled 99.9 17 PDB header:transferase/replication Chain: I: PDB Molecule:dna polymerase; PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein 24 d1x9ma1 not modelled 99.7 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 25 d2py5a2 not modelled 99.6 18 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I 26 c2kzzA_ not modelled 98.4 18 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: klenow fragment with normal substrate and zinc only 27 c1tk0A_ not modelled 98.2 18 PDB header:transferase/electron transport/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and2 ddctp at the insertion site 28 d2qxfa1 not modelled 98.1 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 29 d2guia1 not modelled 97.8 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 30 d1y97a1 not modelled 97.8 22 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 31 c1njzA_ not modelled 97.7 13 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase i; PDBTitle: cytosine-thymine mismatch at the polymerase active site 32 d1kfsa1 not modelled 97.6 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 33 d2f96a1 not modelled 97.6 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 34 d1wlja_ not modelled 96.6 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 35 c2e6mA_ not modelled 96.5 17 PDB header:hydrolase Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog; PDBTitle: structure of mouse werner exonuclease domain 36 d1yt3a3 not modelled 96.4 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 37 c3u6fA_ not modelled 96.1 21 PDB header:hydrolase/dna Chain: A: PDB Molecule:three prime repair exonuclease 1; PDBTitle: mouse trex1 d200n mutant 38 c2p1jB_ not modelled 95.8 27 PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii polc-type; PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima 39 c2is3B_ not modelled 95.5 24 PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease t; PDBTitle: crystal structure of escherichia coli rnase t 40 c3tr8A_ not modelled 95.4 17 PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii 41 d1w0ha_ not modelled 95.4 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 42 d2py5a1 not modelled 95.3 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 43 d2igia1 not modelled 94.6 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 44 d2hhva1 not modelled 94.3 11 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 45 d3b6oa1 not modelled 94.3 23 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 46 c2xriA_ not modelled 93.9 19 PDB header:hydrolase Chain: A: PDB Molecule:eri1 exoribonuclease 3; PDBTitle: crystal structure of human eri1 exoribonuclease 3 47 c2gbzA_ not modelled 93.6 17 PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix 48 c4ktqA_ not modelled 93.3 20 PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna 49 d1j9aa_ not modelled 93.2 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 50 d2hbka2 not modelled 92.4 21 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 51 c1yt3A_ not modelled 92.2 14 PDB header:hydrolase,translation Chain: A: PDB Molecule:ribonuclease d; PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing 52 c2hbkA_ not modelled 90.8 21 PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn 53 d1vk0a_ not modelled 88.8 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 54 c3ikmD_ not modelled 80.1 21 PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme 55 c1zbhA_ not modelled 78.7 17 PDB header:hydrolase/rna Chain: A: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease 56 c3cymA_ not modelled 69.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bad_0989; PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis 57 c1zbuB_ not modelled 62.0 17 PDB header:hydrolase Chain: B: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: crystal structure of full-length 3'-exonuclease 58 c3sahA_ not modelled 52.6 16 PDB header:hydrolase Chain: A: PDB Molecule:exosome component 10; PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site 59 c3fniA_ not modelled 49.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 60 d1uoca_ not modelled 44.0 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease 61 c1q7tA_ not modelled 30.5 18 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein rv1170; PDBTitle: rv1170 (mshb) from mycobacterium tuberculosis 62 c3cm6A_ not modelled 27.0 17 PDB header:hydrolase, apoptosis Chain: A: PDB Molecule:cell death-related nuclease 4; PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er 63 d1q74a_ not modelled 26.9 17 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 64 d1n71a_ not modelled 21.8 23 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 65 c3f8kA_ not modelled 18.0 11 PDB header:transferase Chain: A: PDB Molecule:protein acetyltransferase; PDBTitle: crystal structure of protein acetyltransferase (pat) from2 sulfolobus solfataricus 66 d1wdua_ not modelled 17.5 27 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 67 c1g2cS_ not modelled 17.1 38 PDB header:viral protein Chain: S: PDB Molecule:fusion protein (f); PDBTitle: human respiratory syncytial virus fusion protein core 68 d1bo4a_ not modelled 16.4 26 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 69 c1bo4A_ not modelled 16.4 26 PDB header:transferase Chain: A: PDB Molecule:protein (serratia marcescens aminoglycoside-3-n- PDBTitle: crystal structure of a gcn5-related n-acetyltransferase: serratia2 marescens aminoglycoside 3-n-acetyltransferase 70 c3zquA_ not modelled 16.3 29 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 71 d1uana_ not modelled 16.0 20 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 72 c2ixdB_ not modelled 15.4 8 PDB header:hydrolase Chain: B: PDB Molecule:lmbe-related protein; PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus 73 d1gx1a_ not modelled 15.1 18 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 74 c3gjzB_ not modelled 15.0 16 PDB header:immune system Chain: B: PDB Molecule:microcin immunity protein mccf; PDBTitle: crystal structure of microcin immunity protein mccf from bacillus2 anthracis str. ames 75 d1iv3a_ not modelled 14.1 18 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 76 d1t0aa_ not modelled 13.8 22 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 77 d1vh8a_ not modelled 13.6 16 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 78 c3re3B_ not modelled 13.5 19 PDB header:lyase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis 79 d1y9wa1 not modelled 13.4 22 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 80 d1rfza_ not modelled 13.0 39 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 81 c3i9sA_ not modelled 12.3 11 PDB header:transferase Chain: A: PDB Molecule:integron cassette protein; PDBTitle: structure from the mobile metagenome of v.cholerae. integron2 cassette protein vch_cass6 82 c2e1nA_ not modelled 12.1 7 PDB header:circadian clock protein Chain: A: PDB Molecule:pex; PDBTitle: crystal structure of the cyanobacterium circadian clock modifier pex 83 d1o6ca_ not modelled 12.0 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 84 c2wvmA_ not modelled 11.9 18 PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii) 85 c2xppB_ not modelled 11.6 75 PDB header:transcription Chain: B: PDB Molecule:chromatin structure modulator; PDBTitle: crystal structure of a spt6-iws1(spn1) complex from2 encephalitozoon cuniculi, form iii 86 d1w55a2 not modelled 11.5 14 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 87 c3bf4B_ not modelled 11.1 26 PDB header:unknown function Chain: B: PDB Molecule:ethyl tert-butyl ether degradation ethd protein; PDBTitle: crystal structure of an ethd-like protein (reut_b5694) from ralstonia2 eutropha jmp134 at 2.10 a resolution 88 d1s3za_ not modelled 11.0 15 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 89 c3tebA_ not modelled 10.6 29 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease/exonuclease/phosphatase; PDBTitle: endonuclease/exonuclease/phosphatase family protein from leptotrichia2 buccalis c-1013-b 90 d1q2ya_ not modelled 10.1 15 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 91 d1ghea_ not modelled 9.9 15 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 92 d1r57a_ not modelled 9.9 10 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 93 c3hlyA_ not modelled 9.8 13 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 94 d1a6db2 not modelled 9.7 11 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 95 c3qd8M_ not modelled 9.7 11 PDB header:metal binding protein Chain: M: PDB Molecule:probable bacterioferritin bfrb; PDBTitle: crystal structure of mycobacterium tuberculosis bfrb 96 d2auna2 not modelled 9.5 22 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 97 d2i09a2 not modelled 8.9 14 Fold:DeoB insert domain-like Superfamily:DeoB insert domain-like Family:DeoB insert domain-like 98 d2d5ra1 not modelled 8.9 23 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease 99 d2beia1 not modelled 8.5 11 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT