Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A6P9
DateWed Jan 25 15:20:15 GMT 2012
Unique Job ID34b38dba3f5c3fa2

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2fymA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of e. coli enolase complexed with the2 minimal binding segment of rnase e.
Confidence and coverage
Confidence:100.0% Coverage:100%
431 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFL
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Disorder  ????



































?
??





?

?????

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   .........70.........80.........90.........100.........110.........120
Sequence  GKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAK
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?
??
?

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   .........130.........140.........150.........160.........170.........180
Sequence  AAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVK
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??????













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??????

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   .........190.........200.........210.........220.........230.........240
Sequence  EAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKD
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????


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   .........250.........260.........270.........280.........290.........300
Sequence  ITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDG
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?






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   .........310.........320.........330.........340.........350.........360
Sequence  FAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAK
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??
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   .........370.........380.........390.........400.........410.........420
Sequence  DAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKA
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???
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   .........430..
Sequence  PYNGRKEIKGQA
Secondary structure 











SS confidence 











Disorder  ?
??
???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2fym chain A

3D model

Region: 2 - 432
Aligned: 431
Modelled: 431
Confidence: 100.0%
Identity: 100%
PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of e. coli enolase complexed with the2 minimal binding segment of rnase e.

Phyre2

PDB 1iyx chain A

3D model

Region: 2 - 429
Aligned: 424
Modelled: 428
Confidence: 100.0%
Identity: 65%
PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of enolase from enterococcus hirae

Phyre2

PDB 3otr chain C

3D model

Region: 1 - 429
Aligned: 426
Modelled: 429
Confidence: 100.0%
Identity: 53%
PDB header:lyase
Chain: C: PDB Molecule:enolase;
PDBTitle: 2.75 angstrom crystal structure of enolase 1 from toxoplasma gondii

Phyre2

PDB 3uj2 chain C

3D model

Region: 3 - 428
Aligned: 419
Modelled: 426
Confidence: 100.0%
Identity: 63%
PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: crystal structure of an enolase from anaerostipes caccae (efi target2 efi-502054) with bound mg and sulfate

Phyre2

PDB 2akm chain A

3D model

Region: 3 - 429
Aligned: 421
Modelled: 427
Confidence: 100.0%
Identity: 53%
PDB header:lyase
Chain: A: PDB Molecule:gamma enolase;
PDBTitle: fluoride inhibition of enolase: crystal structure of the2 inhibitory complex

Phyre2

PDB 3qn3 chain B

3D model

Region: 1 - 427
Aligned: 414
Modelled: 424
Confidence: 100.0%
Identity: 55%
PDB header:lyase
Chain: B: PDB Molecule:enolase;
PDBTitle: phosphopyruvate hydratase from campylobacter jejuni.

Phyre2

PDB 3tqp chain A

3D model

Region: 2 - 429
Aligned: 415
Modelled: 425
Confidence: 100.0%
Identity: 58%
PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: structure of an enolase (eno) from coxiella burnetii

Phyre2

PDB 1l8p chain C

3D model

Region: 4 - 430
Aligned: 422
Modelled: 427
Confidence: 100.0%
Identity: 52%
PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: mg-phosphonoacetohydroxamate complex of s39a yeast enolase 1

Phyre2

PDB 2pa6 chain A

3D model

Region: 3 - 429
Aligned: 414
Modelled: 427
Confidence: 100.0%
Identity: 58%
PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of mj0232 from methanococcus jannaschii

Phyre2

PDB 3qtp chain B

3D model

Region: 3 - 428
Aligned: 420
Modelled: 426
Confidence: 100.0%
Identity: 51%
PDB header:lyase
Chain: B: PDB Molecule:enolase 1;
PDBTitle: crystal structure analysis of entamoeba histolytica enolase

Phyre2

PDB 2ptw chain A

3D model

Region: 1 - 427
Aligned: 402
Modelled: 406
Confidence: 100.0%
Identity: 53%
PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of the t. brucei enolase complexed with2 sulphate, identification of a metal binding site iv

Phyre2

PDB 2fym chain A domain 1

3D model

Region: 141 - 432
Aligned: 292
Modelled: 292
Confidence: 100.0%
Identity: 100%
Fold: TIM beta/alpha-barrel
Superfamily: Enolase C-terminal domain-like
Family: Enolase

Phyre2

PDB 1iyx chain A domain 1

3D model

Region: 143 - 429
Aligned: 287
Modelled: 287
Confidence: 100.0%
Identity: 68%
Fold: TIM beta/alpha-barrel
Superfamily: Enolase C-terminal domain-like
Family: Enolase

Phyre2

PDB 1w6t chain A domain 1

3D model

Region: 143 - 429
Aligned: 287
Modelled: 287
Confidence: 100.0%
Identity: 61%
Fold: TIM beta/alpha-barrel
Superfamily: Enolase C-terminal domain-like
Family: Enolase

Phyre2

PDB 2al1 chain A domain 1

3D model

Region: 143 - 430
Aligned: 284
Modelled: 288
Confidence: 100.0%
Identity: 50%
Fold: TIM beta/alpha-barrel
Superfamily: Enolase C-terminal domain-like
Family: Enolase

Phyre2

PDB 2akz chain A domain 1

3D model

Region: 144 - 431
Aligned: 284
Modelled: 288
Confidence: 100.0%
Identity: 49%
Fold: TIM beta/alpha-barrel
Superfamily: Enolase C-terminal domain-like
Family: Enolase

Phyre2

PDB 2ptz chain A domain 1

3D model

Region: 143 - 427
Aligned: 283
Modelled: 285
Confidence: 100.0%
Identity: 47%
Fold: TIM beta/alpha-barrel
Superfamily: Enolase C-terminal domain-like
Family: Enolase

Phyre2

PDB 1pdz chain A domain 1

3D model

Region: 143 - 429
Aligned: 283
Modelled: 285
Confidence: 100.0%
Identity: 50%
Fold: TIM beta/alpha-barrel
Superfamily: Enolase C-terminal domain-like
Family: Enolase

Phyre2

PDB 3thu chain C

3D model

Region: 1 - 390
Aligned: 323
Modelled: 327
Confidence: 100.0%
Identity: 20%
PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg

Phyre2

PDB 2o56 chain D

3D model

Region: 1 - 411
Aligned: 355
Modelled: 371
Confidence: 100.0%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium

Phyre2
1

c2fymA_
2

c1iyxA_
3

c3otrC_
4

c3uj2C_
5

c2akmA_
6

c3qn3B_
7

c3tqpA_
8

c1l8pC_
9

c2pa6A_
10

c3qtpB_
11

c2ptwA_
12

d2fyma1
13

d1iyxa1
14

d1w6ta1
15

d2al1a1
16

d2akza1
17

d2ptza1
18

d1pdza1
19

c3thuC_
20

c2o56D_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2fymA_



100.0 100 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of e. coli enolase complexed with the2 minimal binding segment of rnase e.
2c1iyxA_



100.0 65 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of enolase from enterococcus hirae
3c3otrC_



100.0 53 PDB header:lyase
Chain: C: PDB Molecule:enolase;
PDBTitle: 2.75 angstrom crystal structure of enolase 1 from toxoplasma gondii
4c3uj2C_



100.0 63 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: crystal structure of an enolase from anaerostipes caccae (efi target2 efi-502054) with bound mg and sulfate
5c2akmA_



100.0 53 PDB header:lyase
Chain: A: PDB Molecule:gamma enolase;
PDBTitle: fluoride inhibition of enolase: crystal structure of the2 inhibitory complex
6c3qn3B_



100.0 55 PDB header:lyase
Chain: B: PDB Molecule:enolase;
PDBTitle: phosphopyruvate hydratase from campylobacter jejuni.
7c3tqpA_



100.0 58 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: structure of an enolase (eno) from coxiella burnetii
8c1l8pC_



100.0 52 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: mg-phosphonoacetohydroxamate complex of s39a yeast enolase 1
9c2pa6A_



100.0 58 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of mj0232 from methanococcus jannaschii
10c3qtpB_



100.0 51 PDB header:lyase
Chain: B: PDB Molecule:enolase 1;
PDBTitle: crystal structure analysis of entamoeba histolytica enolase
11c2ptwA_



100.0 53 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of the t. brucei enolase complexed with2 sulphate, identification of a metal binding site iv
12d2fyma1



100.0 100 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
13d1iyxa1



100.0 68 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
14d1w6ta1



100.0 61 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
15d2al1a1



100.0 50 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
16d2akza1



100.0 49 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
17d2ptza1



100.0 47 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
18d1pdza1



100.0 50 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
19c3thuC_



100.0 20 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg
20c2o56D_



100.0 15 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium
21c3tjiA_



not modelled 100.0 18 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, n-terminal
PDBTitle: crystal structure of an enolase from enterobacter sp. 638 (efi target2 efi-501662) with bound mg
22c2qjjC_



not modelled 100.0 20 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans
23c3dipA_



not modelled 100.0 19 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase protein from the2 environmental genome shotgun sequencing of the sargasso sea
24c2pozA_



not modelled 100.0 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase;
PDBTitle: crystal structure of a putative dehydratase from mesorhizobium loti
25c2gl5A_



not modelled 100.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase protein;
PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium
26c3dfhC_



not modelled 100.0 18 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3
27c3t6cB_



not modelled 100.0 16 PDB header:lyase
Chain: B: PDB Molecule:putative mand family dehydratase;
PDBTitle: crystal structure of an enolase from pantoea ananatis (efi target efi-2 501676) with bound d-gluconate and mg
28c2ox4E_



not modelled 100.0 17 PDB header:isomerase
Chain: E: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of putative dehydratase from zymomonas mobilis zm4
29c1f9cA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:protein (muconate cycloisomerase i);
PDBTitle: crystal structure of mle d178n variant
30c3rcyC_



not modelled 100.0 15 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035
31c3n4eA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, c-terminal
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from paracoccus denitrificans pd1222
32c3tj4B_



not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of an enolase from agrobacterium tumefaciens (efi2 target efi-502087) no mg
33c2p88E_



not modelled 100.0 20 PDB header:lyase
Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme
PDBTitle: crystal structure of n-succinyl arg/lys racemase from2 bacillus cereus atcc 14579
34c3mqtV_



not modelled 100.0 18 PDB header:isomerase
Chain: V: PDB Molecule:
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from shewanella pealeana
35c3cb3B_



not modelled 100.0 21 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of l-talarate dehydratase from polaromonas sp. js6662 complexed with mg and l-glucarate
36c3fcpF_



not modelled 100.0 18 PDB header:isomerase
Chain: F: PDB Molecule:l-ala-d/l-glu epimerase, a muconate lactonizing
PDBTitle: crystal structure of muconate lactonizing enzyme from2 klebsiella pneumoniae
37c2qdeA_



not modelled 100.0 25 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1
38c3mkcA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:racemase;
PDBTitle: crystal structure of a putative racemase
39c2qq6B_



not modelled 100.0 15 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941
40c3bsmD_



not modelled 100.0 18 PDB header:lyase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens
41c2oo6A_



not modelled 100.0 16 PDB header:isomerase
Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase;
PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400
42c2qgyA_



not modelled 100.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:enolase from the environmental genome shotgun
PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea
43c3px5A_



not modelled 100.0 22 PDB header:metal binding protein
Chain: A: PDB Molecule:enzyme of enolase superfamily;
PDBTitle: structure of efi enolase target en500555, a putative dipeptide2 epimerase: apo structure
44c3sjnB_



not modelled 100.0 20 PDB header:lyase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of enolase spea_3858 (target efi-500646) from2 shewanella pealeana with magnesium bound
45c3i6eA_



not modelled 100.0 19 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase i;
PDBTitle: crystal structure of muconate lactonizing enzyme from2 ruegeria pomeroyi.
46c2pp1C_



not modelled 100.0 22 PDB header:lyase
Chain: C: PDB Molecule:l-talarate/galactarate dehydratase;
PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate
47c3h12B_



not modelled 100.0 17 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50
48c2oz3F_



not modelled 100.0 20 PDB header:lyase
Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii
49c2chrA_



not modelled 100.0 19 PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: a re-evaluation of the crystal structure of chloromuconate2 cycloisomerase
50c2podA_



not modelled 100.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase / muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from burkholderia2 pseudomallei k96243
51c3rr1B_



not modelled 100.0 17 PDB header:lyase
Chain: B: PDB Molecule:putative d-galactonate dehydratase;
PDBTitle: crystal structure of enolase prk14017 (target efi-500653) from2 ralstonia pickettii 12j
52c1kkoB_



not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase;
PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase
53c1nu5A_



not modelled 100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: crystal structure of pseudomonas sp. p51 chloromuconate lactonizing2 enzyme
54c3i4kA_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:muconate lactonizing enzyme;
PDBTitle: crystal structure of muconate lactonizing enzyme from2 corynebacterium glutamicum
55c1rvkA_



not modelled 100.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of enolase agr_l_2751 from agrobacterium tumefaciens
56c3q45E_



not modelled 100.0 23 PDB header:isomerase
Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family;
PDBTitle: crystal structure of dipeptide epimerase from cytophaga hutchinsonii2 complexed with mg and dipeptide d-ala-l-val
57c3t9pB_



not modelled 100.0 17 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme family protein from roseovarius
58c3sqsA_



not modelled 100.0 19 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12
59c1jpmB_



not modelled 100.0 21 PDB header:isomerase
Chain: B: PDB Molecule:l-ala-d/l-glu epimerase;
PDBTitle: l-ala-d/l-glu epimerase
60c2oqhD_



not modelled 100.0 19 PDB header:isomerase
Chain: D: PDB Molecule:putative isomerase;
PDBTitle: crystal structure of an isomerase from streptomyces coelicolor a3(2)
61c3dg7B_



not modelled 100.0 22 PDB header:isomerase
Chain: B: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of muconate lactonizing enzyme from mucobacterium2 smegmatis complexed with muconolactone
62c2fkpC_



not modelled 100.0 19 PDB header:isomerase
Chain: C: PDB Molecule:n-acylamino acid racemase;
PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase
63c2nqlB_



not modelled 100.0 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens
64c3cxoA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:putative galactonate dehydratase;
PDBTitle: crystal structure of l-rhamnonate dehydratase from2 salmonella typhimurium complexed with mg and 3-deoxy-l-3 rhamnonate
65c2p0iA_



not modelled 100.0 21 PDB header:lyase
Chain: A: PDB Molecule:l-rhamnonate dehydratase;
PDBTitle: crystal structure of l-rhamnonate dehydratase from gibberella zeae
66c3ik4A_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus
67c3jw7E_



not modelled 100.0 22 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from enterococcus faecalis2 v583 complexed with mg and dipeptide l-ile-l-tyr
68c3mwcA_



not modelled 100.0 18 PDB header:ligase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of probable o-succinylbenzoic acid synthetase from2 kosmotoga olearia
69c3t8qA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica
70c3es8D_



not modelled 100.0 19 PDB header:isomerase, lyase
Chain: D: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of divergent enolase from oceanobacillus2 iheyensis complexed with mg and l-malate.
71c3my9A_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a muconate cycloisomerase from azorhizobium2 caulinodans
72c3bjsB_



not modelled 100.0 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from polaromonas2 sp. js666
73c2gdqB_



not modelled 100.0 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yitf;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution
74c3fv9D_



not modelled 100.0 19 PDB header:hydrolase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of putative mandelate racemase/muconatelactonizing2 enzyme from roseovarius nubinhibens ism complexed with magnesium
75c2hxtA_



not modelled 100.0 22 PDB header:unknown function
Chain: A: PDB Molecule:l-fuconate dehydratase;
PDBTitle: crystal structure of l-fuconate dehydratase from xanthomonas2 campestris liganded with mg++ and d-erythronohydroxamate
76c3toyC_



not modelled 100.0 22 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of enolase brado_4202 (target efi-501651) from2 bradyrhizobium sp. ors278 with calcium and acetate bound
77c2ovlA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:putative racemase;
PDBTitle: crystal structure of a racemase from streptomyces2 coelicolor a3(2)
78c2rdxG_



not modelled 100.0 16 PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, putative;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from roseovarius nubinhibens ism
79c3ddmD_



not modelled 100.0 16 PDB header:lyase
Chain: D: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50
80c2pgwC_



not modelled 100.0 19 PDB header:isomerase
Chain: C: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a putative muconate cycloisomerase from2 sinorhizobium meliloti 1021
81c2ps2A_



not modelled 100.0 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of putative mandelate racemase/muconate2 lactonizing enzyme from aspergillus oryzae
82c2zc8B_



not modelled 100.0 20 PDB header:metal binding protein
Chain: B: PDB Molecule:n-acylamino acid racemase;
PDBTitle: crystal structure of n-acylamino acid racemase from thermus2 thermophilus hb8
83c1mraA_



not modelled 100.0 16 PDB header:racemase
Chain: A: PDB Molecule:mandelate racemase;
PDBTitle: mandelate racemase mutant d270n co-crystallized with (s)-atrolactate
84c1sjaA_



not modelled 100.0 18 PDB header:lyase, isomerase
Chain: A: PDB Molecule:n-acylamino acid racemase;
PDBTitle: x-ray structure of o-succinylbenzoate synthase complexed2 with n-acetylmethionine
85c3cyjA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme-2 like protein from rubrobacter xylanophilus
86c2hzgB_



not modelled 100.0 17 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme/enolase
PDBTitle: crystal stucture of predicted mandelate racemase from rhodobacter2 sphaeroides
87c3ugvE_



not modelled 100.0 19 PDB header:lyase
Chain: E: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase from alpha pretobacterium bal199 (efi2 target efi-501650) with bound mg
88c3ritE_



not modelled 100.0 21 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from methylococcus capsulatus2 complexed with mg and dipeptide l-arg-d-lys
89c1wufB_



not modelled 100.0 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein lin2664;
PDBTitle: crystal structure of protein gi:16801725, member of enolase2 superfamily from listeria innocua clip11262
90c3dfyJ_



not modelled 100.0 21 PDB header:isomerase
Chain: J: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of apo dipeptide epimerase from2 thermotoga maritima
91c3eezA_



not modelled 100.0 16 PDB header:isomerase
Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme from silicibacter pomeroyi
92c2qddA_



not modelled 100.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from roseovarius2 nubinhibens ism
93c1wueA_



not modelled 100.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of protein gi:29375081, unknown member of enolase2 superfamily from enterococcus faecalis v583
94c3msyC_



not modelled 100.0 17 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from a marine actinobacterium
95c2ppgB_



not modelled 100.0 19 PDB header:isomerase
Chain: B: PDB Molecule:putative isomerase;
PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti
96c2dw7G_



not modelled 100.0 19 PDB header:lyase
Chain: G: PDB Molecule:bll6730 protein;
PDBTitle: crystal structure of d-tartrate dehydratase from2 bradyrhizobium japonicum complexed with mg++ and meso-3 tartrate
97c1kczA_



not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:beta-methylaspartase;
PDBTitle: crystal structure of beta-methylaspartase from clostridium2 tetanomorphum. mg-complex.
98c2pmqA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from roseovarius sp. htcc2601
99c3n6jA_



not modelled 100.0 14 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z
100c3mznA_



not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of probable glucarate dehydratase from2 chromohalobacter salexigens dsm 3043
101c1ec8B_



not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:glucarate dehydratase;
PDBTitle: e. coli glucarate dehydratase bound to product 2,3-2 dihydroxy-5-oxo-hexanedioate
102c2oz8B_



not modelled 100.0 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mll7089 protein;
PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti
103c3nxlD_



not modelled 100.0 12 PDB header:lyase
Chain: D: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium
104c3qldB_



not modelled 100.0 19 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: structure of probable mandelate racemase (aalaa1draft_2112) from2 alicyclobacillus acidocaldarius
105d2fyma2



not modelled 100.0 100 Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
106c3ijlA_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase;
PDBTitle: structure of dipeptide epimerase from bacteroides thetaiotaomicron2 complexed with l-pro-d-glu; nonproductive substrate binding.
107d2akza2



not modelled 100.0 63 Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
108d2al1a2



not modelled 100.0 57 Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
109d1pdza2



not modelled 100.0 56 Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
110c1jpdX_



not modelled 100.0 21 PDB header:isomerase
Chain: X: PDB Molecule:l-ala-d/l-glu epimerase;
PDBTitle: l-ala-d/l-glu epimerase
111d2ptza2



not modelled 100.0 60 Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
112c2pgeA_



not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:menc;
PDBTitle: crystal structure of menc from desulfotalea psychrophila2 lsv54
113c3n4fD_



not modelled 100.0 17 PDB header:isomerase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10
114c2oktA_



not modelled 100.0 15 PDB header:lyase
Chain: A: PDB Molecule:o-succinylbenzoic acid synthetase;
PDBTitle: crystal structure of o-succinylbenzoic acid synthetase from2 staphylococcus aureus, ligand-free form
115d1iyxa2



not modelled 100.0 60 Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
116d1w6ta2



not modelled 100.0 53 Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
117c2oztA_



not modelled 100.0 15 PDB header:lyase
Chain: A: PDB Molecule:tlr1174 protein;
PDBTitle: crystal structure of o-succinylbenzoate synthase from2 thermosynechococcus elongatus bp-1
118c3gc2A_



not modelled 100.0 21 PDB header:lyase
Chain: A: PDB Molecule:o-succinylbenzoate synthase;
PDBTitle: 1.85 angstrom crystal structure of o-succinylbenzoate synthase from2 salmonella typhimurium in complex with succinic acid
119c3cawB_



not modelled 100.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:o-succinylbenzoate synthase;
PDBTitle: crystal structure of o-succinylbenzoate synthase from2 bdellovibrio bacteriovorus liganded with mg
120d1kkoa1



not modelled 99.9 18 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0