Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	S	E	N	Q	S	K	G	V	H	Y	A	K	S	Q	R	L	L	E	I	N	H	A	H	L	Q	L	M	E	S	L	L	D	E	G	K	K	H	N	I	F	K	P	D	I	D	P	L	Q	V	N	I	N	I	A	A	L	G	G
Secondary structure
SS confidence
Disorder		?	?	?				?		?	?	?							?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Sequence		Y	Y	L	I	N	Q	H	T	L	G	L	V	Y	H	I	S	M	V	S	P	Q	A	L	E	A	R	R	K	V	I	K	E	T	I	L	S	W	L	L	V	D	P	S	S	T	A	H	E
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pb6 chain A domain 2 Region: 1 - 99 Aligned: 96 Modelled: 99 Confidence: 99.8% Identity: 15% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 2fx0 chain A domain 2 Region: 1 - 77 Aligned: 73 Modelled: 77 Confidence: 99.7% Identity: 11% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 3npi chain B Region: 23 - 108 Aligned: 86 Modelled: 86 Confidence: 99.4% Identity: 21% PDB header:gene regulation Chain: B: PDB Molecule:tetr family regulatory protein; PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution Phyre2 PDB 2qtq chain B Region: 3 - 100 Aligned: 97 Modelled: 97 Confidence: 98.8% Identity: 12% PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution Phyre2 PDB 1pb6 chain D Region: 3 - 100 Aligned: 95 Modelled: 98 Confidence: 98.5% Identity: 15% PDB header:transcription Chain: D: PDB Molecule:hypothetical transcriptional regulator ycdc; PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc Phyre2 PDB 1vi0 chain A domain 2 Region: 3 - 99 Aligned: 87 Modelled: 97 Confidence: 98.2% Identity: 17% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 3gzi chain A Region: 15 - 99 Aligned: 84 Modelled: 84 Confidence: 98.1% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution Phyre2 PDB 2d6y chain A domain 2 Region: 1 - 98 Aligned: 92 Modelled: 95 Confidence: 97.7% Identity: 10% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 3s5r chain A Region: 15 - 101 Aligned: 84 Modelled: 81 Confidence: 97.6% Identity: 15% PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator tetr family; PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution Phyre2 PDB 2id3 chain A domain 2 Region: 16 - 101 Aligned: 74 Modelled: 86 Confidence: 97.6% Identity: 15% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 2o7t chain A domain 2 Region: 15 - 103 Aligned: 76 Modelled: 74 Confidence: 97.5% Identity: 16% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 2fq4 chain A domain 2 Region: 18 - 100 Aligned: 71 Modelled: 79 Confidence: 97.5% Identity: 15% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 2d6y chain A Region: 18 - 98 Aligned: 78 Modelled: 78 Confidence: 97.5% Identity: 9% PDB header:gene regulation Chain: A: PDB Molecule:putative tetr family regulatory protein; PDBTitle: crystal structure of transcriptional factor sco4008 from streptomyces2 coelicolor a3(2) Phyre2 PDB 3dew chain A Region: 3 - 100 Aligned: 93 Modelled: 98 Confidence: 97.4% Identity: 13% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca. Phyre2 PDB 1rkt chain A domain 2 Region: 15 - 101 Aligned: 80 Modelled: 87 Confidence: 97.3% Identity: 15% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 2g3b chain A domain 2 Region: 16 - 96 Aligned: 74 Modelled: 81 Confidence: 97.3% Identity: 12% Fold: Tetracyclin repressor-like, C-terminal domain Superfamily: Tetracyclin repressor-like, C-terminal domain Family: Tetracyclin repressor-like, C-terminal domain Phyre2 PDB 2id3 chain A Region: 16 - 101 Aligned: 78 Modelled: 86 Confidence: 97.2% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2) Phyre2 PDB 2f07 chain A Region: 15 - 100 Aligned: 79 Modelled: 86 Confidence: 97.1% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:yvdt; PDBTitle: crystal structure of yvdt from bacillus subtilis Phyre2 PDB 2hyj chain A Region: 16 - 96 Aligned: 73 Modelled: 81 Confidence: 97.0% Identity: 15% PDB header:transcription Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor Phyre2 PDB 3nrg chain A Region: 15 - 99 Aligned: 85 Modelled: 85 Confidence: 96.8% Identity: 11% PDB header:transcription Chain: A: PDB Molecule:tetr family transcriptional regulator; PDBTitle: crystal structure of a tetr family transcriptional regulator2 (caur_2714) from chloroflexus aurantiacus j-10-fl at 2.56 a3 resolution Phyre2 1 d1pb6a2 2 d2fx0a2 3 c3npiB_ 4 c2qtqB_ 5 c1pb6D_ 6 d1vi0a2 7 c3gziA_ 8 d2d6ya2 9 c3s5rA_ 10 d2id3a2 11 d2o7ta2 12 d2fq4a2 13 c2d6yA_ 14 c3dewA_ 15 d1rkta2 16 d2g3ba2 17 c2id3A_ 18 c2f07A_ 19 c2hyjA_ 20 c3nrgA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pb6a2 99.8 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 2 d2fx0a2 99.7 11 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 3 c3npiB_ 99.4 21 PDB header:gene regulation Chain: B: PDB Molecule:tetr family regulatory protein; PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution 4 c2qtqB_ 98.8 12 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution 5 c1pb6D_ 98.5 15 PDB header:transcription Chain: D: PDB Molecule:hypothetical transcriptional regulator ycdc; PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc 6 d1vi0a2 98.2 17 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 7 c3gziA_ 98.1 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution 8 d2d6ya2 97.7 10 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 9 c3s5rA_ 97.6 15 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator tetr family; PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution 10 d2id3a2 97.6 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 11 d2o7ta2 97.5 16 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 12 d2fq4a2 97.5 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 13 c2d6yA_ 97.5 9 PDB header:gene regulation Chain: A: PDB Molecule:putative tetr family regulatory protein; PDBTitle: crystal structure of transcriptional factor sco4008 from streptomyces2 coelicolor a3(2) 14 c3dewA_ 97.4 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca. 15 d1rkta2 97.3 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 16 d2g3ba2 97.3 12 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 17 c2id3A_ 97.2 13 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2) 18 c2f07A_ 97.1 14 PDB header:transcription Chain: A: PDB Molecule:yvdt; PDBTitle: crystal structure of yvdt from bacillus subtilis 19 c2hyjA_ 97.0 15 PDB header:transcription Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor 20 c3nrgA_ 96.8 11 PDB header:transcription Chain: A: PDB Molecule:tetr family transcriptional regulator; PDBTitle: crystal structure of a tetr family transcriptional regulator2 (caur_2714) from chloroflexus aurantiacus j-10-fl at 2.56 a3 resolution 21 c3f0cA_ not modelled 96.6 7 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406 22 d1t33a2 not modelled 96.6 10 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 23 c2rekA_ not modelled 96.6 10 PDB header:transcription Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of tetr-family transcriptional regulator 24 d2fbqa2 not modelled 96.5 11 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 25 c2pz9A_ not modelled 96.5 13 PDB header:transcription Chain: A: PDB Molecule:putative regulatory protein; PDBTitle: crystal structure of putative transcriptional regulator sco4942 from2 streptomyces coelicolor 26 c1t33B_ not modelled 96.5 11 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family); PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2 27 c2g3bB_ not modelled 96.5 12 PDB header:transcription Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp. 28 c2qwtA_ not modelled 96.5 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of the tetr transcription regulatory2 protein from mycobacterium vanbaalenii 29 d2gfna2 not modelled 96.5 10 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 30 c2wuiA_ not modelled 96.4 11 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa. 31 c2fq4A_ not modelled 96.4 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the crystal structure of the transcriptional regulator (tetr family)2 from bacillus cereus 32 c3bhqB_ not modelled 96.4 14 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution 33 c2jk3A_ not modelled 96.4 12 PDB header:transcription Chain: A: PDB Molecule:hemolysin ii regulatory protein; PDBTitle: crystal structure of the hlyiir mutant protein with2 residues 169-186 substituted by gssgssg linker 34 c2zb9A_ not modelled 96.3 15 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of tetr family transcription regulator2 sco0332 35 c3qbmA_ not modelled 96.2 14 PDB header:transcription regulator Chain: A: PDB Molecule:tetr transcriptional regulator; PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution 36 c2o7tA_ not modelled 96.0 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a tetr family transcriptional regulator2 (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 a3 resolution 37 d1ui5a2 not modelled 96.0 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 38 c2iaiA_ not modelled 96.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional regulator sco3833; PDBTitle: crystal structure of sco3833, a member of the tetr transcriptional2 regulator family from streptomyces coelicolor a3 39 c1ui6B_ not modelled 95.9 12 PDB header:antibiotic Chain: B: PDB Molecule:a-factor receptor homolog; PDBTitle: crystal structure of gamma-butyrolactone receptor (arpa-like protein) 40 c1jumB_ not modelled 95.9 12 PDB header:transcription Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine 41 c3rh2A_ not modelled 95.8 17 PDB header:dna binding protein Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator; PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution 42 c2uxoB_ not modelled 95.8 13 PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator ttgr; PDBTitle: ttgr in complex with tetracycline 43 c3cdlA_ not modelled 95.8 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator aefr; PDBTitle: crystal structure of a tetr family transcriptional regulator from2 pseudomonas syringae pv. tomato str. dc3000 44 c3bcgA_ not modelled 95.7 12 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator acrr; PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction 45 d2hyja2 not modelled 95.6 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 46 c2q24A_ not modelled 95.6 14 PDB header:transcription Chain: A: PDB Molecule:putative tetr family transcriptional regulator; PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor 47 c2w53B_ not modelled 95.6 13 PDB header:transcription Chain: B: PDB Molecule:repressor; PDBTitle: structure of smet, the repressor of the stenotrophomonas2 maltophilia multidrug efflux pump smedef. 48 c2ibdB_ not modelled 95.5 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:possible transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900 49 c3on2C_ not modelled 95.4 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: structure of a protein with unknown function from rhodococcus sp. rha1 50 c3anpD_ not modelled 95.3 12 PDB header:transcription Chain: D: PDB Molecule:transcriptional repressor, tetr family; PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa. 51 c3c2bA_ not modelled 95.1 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of tetr transcriptional regulator from agrobacterium2 tumefaciens 52 c3himA_ not modelled 95.0 13 PDB header:transcription regulator Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of a bacterial regulatory protein in the tetr2 family from rhodococcus rha1 to 2.2a 53 c2rasB_ not modelled 94.9 8 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a putative tetr/acrr family transcriptional2 regulator (saro_0558) from novosphingobium aromaticivorans dsm at3 1.80 a resolution 54 c2pbxB_ not modelled 94.8 8 PDB header:transcription Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein; PDBTitle: vibrio cholerae hapr 55 d2g7sa2 not modelled 94.7 7 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 56 d2gena2 not modelled 94.7 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 57 c3dcfB_ not modelled 94.6 11 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution 58 c2i10A_ not modelled 94.2 11 PDB header:transcription Chain: A: PDB Molecule:putative tetr transcriptional regulator; PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1 59 c1vi0B_ not modelled 94.2 19 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator 60 d1jt6a2 not modelled 94.1 12 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 61 c1rktA_ not modelled 94.1 17 PDB header:transcription Chain: A: PDB Molecule:protein yfir; PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis 62 c3eupA_ not modelled 93.9 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii 63 c2gfnA_ not modelled 93.8 9 PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein; PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1 64 c3cwrA_ not modelled 93.5 9 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of transcriptional regulator of tetr2 family (yp_425770.1) from rhodospirillum rubrum atcc 111703 at 1.50 a resolution 65 c2genA_ not modelled 93.4 14 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1 66 c1zkgB_ not modelled 93.1 10 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of transcriptional regulator, tetr family (tm1030)2 from thermotoga maritima at 2.30 a resolution 67 c3bruA_ not modelled 92.7 12 PDB header:transcription Chain: A: PDB Molecule:regulatory protein, tetr family; PDBTitle: crystal structure of regulatory protein tetr from rhodobacter2 sphaeroides 68 c3e7qB_ not modelled 92.3 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1 69 d2i10a2 not modelled 92.0 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 70 c3lwjA_ not modelled 91.7 16 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution 71 c2fbqA_ not modelled 91.6 11 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of transcriptional regulator pa3006 72 c2g7sA_ not modelled 91.3 11 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens 73 c3crjC_ not modelled 90.3 16 PDB header:transcription regulator Chain: C: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a tetr transcription regulator from haloarcula2 marismortui atcc 43049 74 c3he0A_ not modelled 89.2 18 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the structure of a putative transcriptional regulator tetr family2 protein from vibrio parahaemolyticus. 75 c3b81A_ not modelled 88.9 19 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, acrr family; PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution 76 c1u9nA_ not modelled 88.4 4 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional repressor ethr; PDBTitle: crystal structure of the transcriptional regulator ethr in2 a ligand bound conformation opens therapeutic perspectives3 against tuberculosis and leprosy 77 c3pasA_ not modelled 88.4 9 PDB header:transcription regulator Chain: A: PDB Molecule:tetr family transcription regulator; PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution 78 c3ppbB_ not modelled 87.8 9 PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr family transcription regulator; PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution 79 c2nx4A_ not modelled 87.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:transcriptional regulator, tetr family protein; PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1. 80 c2hytA_ not modelled 85.7 17 PDB header:transcription Chain: A: PDB Molecule:tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator (eca1819)2 from pectobacterium atrosepticum at 1.64 a resolution 81 c3knwB_ not modelled 85.4 8 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator (tetr/acrr family); PDBTitle: crystal structure of a putative transcriptional regulator (tetr/acrr2 family member) from putative transcriptional regulator (tetr/acrr3 family) 82 d1t56a2 not modelled 84.4 4 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 83 c2qcoA_ not modelled 82.6 5 PDB header:transcription Chain: A: PDB Molecule:cmer; PDBTitle: crystal structure of the transcriptional regulator cmer from2 campylobacter jejuni 84 c3ccyA_ not modelled 78.2 8 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator from2 bordetella parapertussis 12822 85 c3colB_ not modelled 67.3 8 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcription regulator; PDBTitle: crystal structure of putative transcription regulator from2 lactobacillus plantarum 86 d1zk8a2 not modelled 60.1 11 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 87 c3qkxB_ not modelled 56.4 3 PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator hi_0893; PDBTitle: crystal structure of a tetr-family transcriptional regulator (hi0893)2 from haemophilus influenzae rd at 2.35 a resolution 88 c3c07B_ not modelled 46.6 4 PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr family transcriptional regulator from2 streptomyces coelicolor a3(2) 89 c2np5A_ not modelled 44.5 21 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator (rha1_ro04179) from2 rhodococcus sp. rha1. 90 d1g8eb_ not modelled 42.6 25 Fold:Flagellar transcriptional activator FlhD Superfamily:Flagellar transcriptional activator FlhD Family:Flagellar transcriptional activator FlhD 91 d1g8ea_ not modelled 41.6 25 Fold:Flagellar transcriptional activator FlhD Superfamily:Flagellar transcriptional activator FlhD Family:Flagellar transcriptional activator FlhD 92 c1zk8A_ not modelled 41.6 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of transcriptional regulator from bacillus cereus2 atcc 14579 93 c3aqsD_ not modelled 36.9 8 PDB header:transcription regulator Chain: D: PDB Molecule:bacterial regulatory proteins, tetr family; PDBTitle: crystal structure of rolr (ncgl1110) without ligand 94 c2zcxA_ not modelled 34.8 11 PDB header:transcription Chain: A: PDB Molecule:tetr-family transcriptional regulator; PDBTitle: crystal structure of tetr family transcriptional regulator2 sco7815 95 c1z0xA_ not modelled 32.3 9 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of transcriptional regulator, tetr family from2 enterococcus faecalis v583 96 c1sgmA_ not modelled 30.6 13 PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf; PDBTitle: crystal structure of hypothetical protein yxaf 97 c2yvhA_ not modelled 30.5 13 PDB header:transcription/dna Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of the operator-binding form of the multi-drug2 binding transcriptional repressor cgmr 98 c3geuC_ not modelled 28.4 8 PDB header:cell adhesion Chain: C: PDB Molecule:intercellular adhesion protein r; PDBTitle: crystal structure of icar from staphylococcus aureus, a member of the2 tetracycline repressor protein family 99 c3nnrA_ not modelled 28.3 10 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a tetr-family transcriptional regulator2 (maqu_3571) from marinobacter aquaeolei vt8 at 2.49 a resolution 100 c3on4D_ not modelled 23.5 20 PDB header:transcription Chain: D: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila 101 c3b6aC_ not modelled 23.5 13 PDB header:transcription Chain: C: PDB Molecule:actr protein; PDBTitle: crystal structure of the streptomyces coelicolor tetr2 family protein actr in complex with actinorhodin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0