Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA0JP43
DateTue Jul 30 13:08:59 BST 2013
Unique Job IDefd0ea767581ce5d
SequenceMLMQVEKKKL ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.348 Y:43.384 Z:40.004
Model (left) based on template c3j1uA_
Top template information
PDB header:motor protein/structural protein
Chain: A: PDB Molecule:cytoplasmic dynein 1 heavy chain 1, seryl t-rna synthetase
PDBTitle: low affinity dynein microtubule binding domain - tubulin complex
Confidence and coverage
Confidence: 98.7% Coverage: 8%
119 residues ( 8% of your sequence) have been modelled with 98.7% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
665 residues ( 47%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLMQVEKKKLLSQADIPTKFDPINYLGEYLMRHNTHYIKDPGVSGYQRVMKEITEELKTH
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   .........70.........80.........90.........100.........110.........120
Sequence  VPDTINNRISKMKEKVKEKREQREYISTVKVKVAGMRKQALEEQFNEWVLNPKGMIPIVV
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   .........130.........140.........150.........160.........170.........180
Sequence  YISSYITDLKSEVFEEFLKHLCHSAEEFREIILTDMRRQMFAELFLQCDSGKVMALDRQR
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   .........190.........200.........210.........220.........230.........240
Sequence  TLALLEAFYDQCSSTTRSLLRNPRQWPFVEFEEIELIEFWGDMDIKKHIYEDFDALLLKM
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   .........250.........260.........270.........280.........290.........300
Sequence  NMLVAEKLAGKLAENKDLPQQQRDQELSSDSTTEPETATQLTSQQRSRRVSLTGQGQGKG
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   .........310.........320.........330.........340.........350.........360
Sequence  PRKTSASKQGASRGSVAEQGSRRSSGVNQTQQRGSVAEQGSRRSSAVEQTQQRGSVAEQG
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   .........370.........380.........390.........400.........410.........420
Sequence  SRRSSTVEQTRQRGSVAEQGSRRSSTVEQTQRRGSVAEQGSRRSSGVNQTQQRGSVAEQG
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   .........430.........440.........450.........460.........470.........480
Sequence  SRRSSAVEQTQQRGSVAEQGSRRSSAMEQEPQTAQDPNSDSLPEQESHRGSITEGSHRGS
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   .........490.........500.........510.........520.........530.........540
Sequence  ISEPGQRRASVTGQRRKSSVDDSGSAGSRRGSGTDQGQHRGSVGQRKGSGERKMSASEYG
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   .........550.........560.........570.........580.........590.........600
Sequence  PHQESITEEPLTASEPGPQIDTIQELDEDSTPQLEDDSALKESKTSELTKIETQEEKPLL
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   .........610.........620.........630.........640.........650.........660
Sequence  LINEEQVPRDSKQPEVPTSSKKERPSGSPKKGRLSGTSKRDSQKDKACEPKPQHVEGKKW
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   .........670.........680.........690.........700.........710.........720
Sequence  SGEFLICDWKIKHVKSEEEEQAKLICDDTRFTDLHATIRNFQTYKGIKGRSAFNGVSLDL
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   .........730.........740.........750.........760.........770.........780
Sequence  LQFVQLLETFVGEDTSFSLSKDLASFFQKNYSETKQEKIKALEQARQNSSRIRRRILLQA
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   .........790.........800.........810.........820.........830.........840
Sequence  IFEKWDNDGSGFLDLNEVDDLLYTYKEGMERESMKKAKLHINFPEPSPGHEVKLSSKQFQ
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   .........850.........860.........870.........880.........890.........900
Sequence  RYIELVVSELRGNEDEVLESVVEFLMGSLERSHVEGLRNCARRKWLHQIQYAAETSGVSL
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   .........910.........920.........930.........940.........950.........960
Sequence  EPVYTETFRVLTQDAEAHGNKKISAHISLLEENVFLPERGHVLLRNVACTLDDAPFVLNK
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  VLYRDMKGISFTVVDEGKPIHVPQVQHHGNIFFWNSFRSKNEYNGSFLALPLQDAYMRIF
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  GVLAVDTLRDPHEINIFLPHEIKFYQGVANAFSTAYHHVHSREHVLHSVMTGIRWLFSVT
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  SGITTITTCFIEPSSEQEDYVLRNMMVTDCLGLAEIHTDPPTITRNACIFRDFLFKCTDT
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  SEVILASSGGETHIAIPLRQRTKEAMGILDVNIGRSRMLLYQEYKDLQKMVKMIQNVSYE
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  ILGEFSGEIEKTMVIEMESAGEVKRAGILFFRTMLQELQECLCLLDSMDFVSLLLYEHKY
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  HVDSILQDITLQEVEANVALVHDVLKGVILFSQREKDSLSDLEEWEKWKFHINKYLVEEI
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  CVLDPTASNVEVNVELVTSYIQAHSRTEVWNFRNIVIELLYHWINICLTLIELNMRQDVS
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   .........1390.........1400......
Sequence  IIPPLPKKSATSIYAISSERSIREKL
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Confidence Key
High(9)                    Low (0)
?Disordered ( 38%)
Alpha helix ( 75%)
Beta strand ( 2%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3j1u chain A

3D model

Region: 1234 - 1376
Aligned: 119
Modelled: 125
Confidence: 98.7%
Identity: 14%
PDB header:motor protein/structural protein
Chain: A: PDB Molecule:cytoplasmic dynein 1 heavy chain 1, seryl t-rna synthetase
PDBTitle: low affinity dynein microtubule binding domain - tubulin complex

Phyre2

PDB 2rr7 chain A

3D model

Region: 1234 - 1376
Aligned: 124
Modelled: 125
Confidence: 98.5%
Identity: 14%
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain 9;
PDBTitle: microtubule binding domain of dynein-c

Phyre2

PDB 3err chain B

3D model

Region: 1234 - 1377
Aligned: 120
Modelled: 126
Confidence: 98.3%
Identity: 13%
PDB header:ligase
Chain: B: PDB Molecule:fusion protein of microtubule binding domain from
PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase

Phyre2

PDB 3ibj chain B

3D model

Region: 967 - 1171
Aligned: 178
Modelled: 184
Confidence: 98.0%
Identity: 12%
PDB header:hydrolase
Chain: B: PDB Molecule:cgmp-dependent 3',5'-cyclic phosphodiesterase;
PDBTitle: x-ray structure of pde2a

Phyre2

PDB 3mf0 chain A

3D model

Region: 854 - 1067
Aligned: 191
Modelled: 208
Confidence: 97.8%
Identity: 10%
PDB header:hydrolase
Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase;
PDBTitle: crystal structure of pde5a gaf domain (89-518)

Phyre2

PDB 3vkh chain A

3D model

Region: 1173 - 1368
Aligned: 172
Modelled: 178
Confidence: 97.7%
Identity: 16%
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain

Phyre2

PDB 1mc0 chain A

3D model

Region: 854 - 1067
Aligned: 198
Modelled: 214
Confidence: 97.7%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:3',5'-cyclic nucleotide phosphodiesterase 2a;
PDBTitle: regulatory segment of mouse 3',5'-cyclic nucleotide phosphodiesterase2 2a, containing the gaf a and gaf b domains

Phyre2

PDB 3o4x chain E

3D model

Region: 9 - 187
Aligned: 178
Modelled: 179
Confidence: 97.3%
Identity: 15%
PDB header:protein binding
Chain: E: PDB Molecule:protein diaphanous homolog 1;
PDBTitle: crystal structure of complex between amino and carboxy terminal2 fragments of mdia1

Phyre2

PDB 1ux5 chain A

3D model

Region: 9 - 165
Aligned: 156
Modelled: 157
Confidence: 97.2%
Identity: 13%
Fold: Formin homology 2 domain (FH2 domain)
Superfamily: Formin homology 2 domain (FH2 domain)
Family: Formin homology 2 domain (FH2 domain)

Phyre2

PDB 3o4x chain F

3D model

Region: 9 - 193
Aligned: 184
Modelled: 185
Confidence: 97.2%
Identity: 14%
PDB header:protein binding
Chain: F: PDB Molecule:protein diaphanous homolog 1;
PDBTitle: crystal structure of complex between amino and carboxy terminal2 fragments of mdia1

Phyre2

PDB 1y64 chain B

3D model

Region: 9 - 167
Aligned: 158
Modelled: 159
Confidence: 96.9%
Identity: 13%
PDB header:structural protein
Chain: B: PDB Molecule:bni1 protein;
PDBTitle: bni1p formin homology 2 domain complexed with atp-actin

Phyre2

PDB 2lb5 chain A

3D model

Region: 935 - 1062
Aligned: 123
Modelled: 128
Confidence: 96.9%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:sensor histidine kinase;
PDBTitle: refined structural basis for the photoconversion of a phytochrome to2 the activated far-red light-absorbing form

Phyre2

PDB 1f5m chain A

3D model

Region: 967 - 1055
Aligned: 79
Modelled: 85
Confidence: 96.8%
Identity: 20%
Fold: Profilin-like
Superfamily: GAF domain-like
Family: GAF domain

Phyre2

PDB 1v9d chain A

3D model

Region: 9 - 179
Aligned: 170
Modelled: 171
Confidence: 96.7%
Identity: 16%
Fold: Formin homology 2 domain (FH2 domain)
Superfamily: Formin homology 2 domain (FH2 domain)
Family: Formin homology 2 domain (FH2 domain)

Phyre2

PDB 1vhm chain B

3D model

Region: 968 - 1056
Aligned: 78
Modelled: 89
Confidence: 96.7%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein yebr;
PDBTitle: crystal structure of an hypothetical protein

Phyre2

PDB 3oov chain A

3D model

Region: 935 - 1063
Aligned: 125
Modelled: 128
Confidence: 96.7%
Identity: 14%
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein, putative;
PDBTitle: crystal structure of a methyl-accepting chemotaxis protein, residues2 122 to 287

Phyre2

PDB 3p01 chain C

3D model

Region: 871 - 1058
Aligned: 163
Modelled: 188
Confidence: 96.7%
Identity: 13%
PDB header:signaling protein
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120

Phyre2

PDB 4fof chain A

3D model

Region: 935 - 1067
Aligned: 128
Modelled: 133
Confidence: 96.6%
Identity: 11%
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the blue-light absorbing form of the2 thermosynechococcus elongatus pixj gaf-domain

Phyre2

PDB 1vhm chain A

3D model

Region: 968 - 1056
Aligned: 78
Modelled: 89
Confidence: 96.4%
Identity: 19%
Fold: Profilin-like
Superfamily: GAF domain-like
Family: GAF domain

Phyre2

PDB 2vjw chain A

3D model

Region: 934 - 1063
Aligned: 112
Modelled: 130
Confidence: 96.4%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:gaf family protein;
PDBTitle: crystal structure of the second gaf domain of devs from2 mycobacterium smegmatis

Phyre2

PDB 3hpb chain A

3D model

Region: 1361 - 1396
Aligned: 31
Modelled: 31
Confidence: 54.8%
Identity: 29%
PDB header:protein transport
Chain: A: PDB Molecule:snx5 protein;
PDBTitle: crystal structure of snx5-px domain in p212121 space group

Phyre2
1

c3j1uA_
2

c2rr7A_
3

c3errB_
4

c3ibjB_
5

c3mf0A_
6

c3vkhA_
7

c1mc0A_
8

c3o4xE_
9

d1ux5a_
10

c3o4xF_
11

c1y64B_
12

c2lb5A_
13

d1f5ma_
14

d1v9da_
15

c1vhmB_
16

c3oovA_
17

c3p01C_
18

c4fofA_
19

d1vhma_
20

c2vjwA_
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c3hpbA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3j1uA_



98.7 14 PDB header:motor protein/structural protein
Chain: A: PDB Molecule:cytoplasmic dynein 1 heavy chain 1, seryl t-rna synthetase
PDBTitle: low affinity dynein microtubule binding domain - tubulin complex
2c2rr7A_



98.5 14 PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain 9;
PDBTitle: microtubule binding domain of dynein-c
3c3errB_



98.3 13 PDB header:ligase
Chain: B: PDB Molecule:fusion protein of microtubule binding domain from
PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase
4c3ibjB_



98.0 12 PDB header:hydrolase
Chain: B: PDB Molecule:cgmp-dependent 3',5'-cyclic phosphodiesterase;
PDBTitle: x-ray structure of pde2a
5c3mf0A_



97.8 10 PDB header:hydrolase
Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase;
PDBTitle: crystal structure of pde5a gaf domain (89-518)
6c3vkhA_



97.7 16 PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
7c1mc0A_



97.7 12 PDB header:hydrolase
Chain: A: PDB Molecule:3',5'-cyclic nucleotide phosphodiesterase 2a;
PDBTitle: regulatory segment of mouse 3',5'-cyclic nucleotide phosphodiesterase2 2a, containing the gaf a and gaf b domains
8c3o4xE_



97.3 15 PDB header:protein binding
Chain: E: PDB Molecule:protein diaphanous homolog 1;
PDBTitle: crystal structure of complex between amino and carboxy terminal2 fragments of mdia1
9d1ux5a_



97.2 13 Fold:Formin homology 2 domain (FH2 domain)
Superfamily:Formin homology 2 domain (FH2 domain)
Family:Formin homology 2 domain (FH2 domain)
10c3o4xF_



97.2 14 PDB header:protein binding
Chain: F: PDB Molecule:protein diaphanous homolog 1;
PDBTitle: crystal structure of complex between amino and carboxy terminal2 fragments of mdia1
11c1y64B_



96.9 13 PDB header:structural protein
Chain: B: PDB Molecule:bni1 protein;
PDBTitle: bni1p formin homology 2 domain complexed with atp-actin
12c2lb5A_



96.9 17 PDB header:transferase
Chain: A: PDB Molecule:sensor histidine kinase;
PDBTitle: refined structural basis for the photoconversion of a phytochrome to2 the activated far-red light-absorbing form
13d1f5ma_



96.8 20 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
14d1v9da_



96.7 16 Fold:Formin homology 2 domain (FH2 domain)
Superfamily:Formin homology 2 domain (FH2 domain)
Family:Formin homology 2 domain (FH2 domain)
15c1vhmB_



96.7 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein yebr;
PDBTitle: crystal structure of an hypothetical protein
16c3oovA_



96.7 14 PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein, putative;
PDBTitle: crystal structure of a methyl-accepting chemotaxis protein, residues2 122 to 287
17c3p01C_



96.7 13 PDB header:signaling protein
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120
18c4fofA_



96.6 11 PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the blue-light absorbing form of the2 thermosynechococcus elongatus pixj gaf-domain
19d1vhma_



96.4 19 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
20c2vjwA_



96.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:gaf family protein;
PDBTitle: crystal structure of the second gaf domain of devs from2 mycobacterium smegmatis
21c3rfbB_



not modelled 96.3 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of frmsr
22c1ykdB_



not modelled 96.3 14 PDB header:lyase
Chain: B: PDB Molecule:adenylate cyclase;
PDBTitle: crystal structure of the tandem gaf domains from a cyanobacterial2 adenylyl cyclase: novel modes of ligand-binding and dimerization
23c3ksiA_



not modelled 96.3 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol)
24c3p01A_



not modelled 96.3 14 PDB header:signaling protein
Chain: A: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120
25c4g3kB_



not modelled 96.2 25 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator nlh1;
PDBTitle: crystal structure of a. aeolicus nlh1 gaf domain in an inactive state
26c3mmhA_



not modelled 96.2 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase;
PDBTitle: x-ray structure of free methionine-r-sulfoxide reductase from2 neisseria meningitidis in complex with its substrate
27c4g3vB_



not modelled 96.2 16 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator nlh2;
PDBTitle: crystal structure of a. aeolicus nlh2 gaf domain in an inactive state
28c3eeaB_



not modelled 96.0 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:gaf domain/hd domain protein;
PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens
29c2k31A_



not modelled 95.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:phosphodiesterase 5a, cgmp-specific;
PDBTitle: solution structure of cgmp-binding gaf domain of2 phosphodiesterase 5
30c4eahE_



not modelled 95.9 7 PDB header:protein binding
Chain: E: PDB Molecule:formin-like protein 3;
PDBTitle: crystal structure of the formin homology 2 domain of fmnl3 bound to2 actin
31d2o9ca1



not modelled 95.9 11 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
32c2qybA_



not modelled 95.8 15 PDB header:membrane protein
Chain: A: PDB Molecule:membrane protein, putative;
PDBTitle: crystal structure of the gaf domain region of putative membrane2 protein from geobacter sulfurreducens pca
33c3k2nB_



not modelled 95.7 10 PDB header:transcription regulator
Chain: B: PDB Molecule:sigma-54-dependent transcriptional regulator;
PDBTitle: the crystal structure of sigma-54-dependent transcriptional2 regulator domain from chlorobium tepidum tls
34c2j1dG_



not modelled 95.5 9 PDB header:protein binding
Chain: G: PDB Molecule:disheveled-associated activator of morphogenesis 1;
PDBTitle: crystallization of hdaam1 c-terminal fragment
35c3dbaB_



not modelled 95.4 15 PDB header:hydrolase
Chain: B: PDB Molecule:cone cgmp-specific 3',5'-cyclic phosphodiesterase subunit
PDBTitle: crystal structure of the cgmp-bound gaf a domain from the2 photoreceptor phosphodiesterase 6c
36c2z6eC_



not modelled 95.4 11 PDB header:protein fibril regulator
Chain: C: PDB Molecule:disheveled-associated activator of morphogenesis
PDBTitle: crystal structure of human daam1 fh2
37d2k2na1



not modelled 95.4 16 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
38c3trcA_



not modelled 95.3 17 PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of the gaf domain from a phosphoenolpyruvate-protein2 phosphotransferase (ptsp) from coxiella burnetii
39c2w3gA_



not modelled 95.2 16 PDB header:transferase
Chain: A: PDB Molecule:two component sensor histidine kinase devs (gaf
PDBTitle: air-oxidized structure of the first gaf domain of2 mycobacterium tuberculosis doss
40c3ci6B_



not modelled 95.1 18 PDB header:transferase
Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: crystal structure of the gaf domain from acinetobacter2 phosphoenolpyruvate-protein phosphotransferase
41c3hcyB_



not modelled 94.5 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative two-component sensor histidine kinase protein;
PDBTitle: the crystal structure of the domain of putative two-component sensor2 histidine kinase protein from sinorhizobium meliloti 1021
42d2veaa1



not modelled 94.4 16 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
43c3o5yA_



not modelled 94.3 13 PDB header:transcription regulator
Chain: A: PDB Molecule:sensor protein;
PDBTitle: the crystal structure of the gaf domain of a two-component sensor2 histidine kinase from bacillus halodurans to 2.45a
44c3w2zA_



not modelled 94.1 15 PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cyanobacterial protein
45d1p0za_



not modelled 93.2 18 Fold:Profilin-like
Superfamily:Sensory domain-like
Family:Sensory domain of two-component sensor kinase
46c2zmfA_



not modelled 93.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase
PDBTitle: crystal structure of the c-terminal gaf domain of human2 phosphodiesterase 10a
47c2oolA_



not modelled 90.9 9 PDB header:signaling protein
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris
48c3e0yA_



not modelled 88.9 27 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of a conserved domain from a protein of2 geobacter sulfurreducens pca
49d1mc0a1



not modelled 88.6 10 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
50d1mc0a2



not modelled 88.0 14 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
51d2oola1



not modelled 87.4 8 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
52d3c2wa1



not modelled 86.6 8 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
53c3e98B_



not modelled 86.0 12 PDB header:unknown function
Chain: B: PDB Molecule:gaf domain of unknown function;
PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution
54c3g36D_



not modelled 85.0 29 PDB header:nuclear protein
Chain: D: PDB Molecule:protein dpy-30 homolog;
PDBTitle: crystal structure of the human dpy-30-like c-terminal domain
55c4e04B_



not modelled 84.1 17 PDB header:signaling protein
Chain: B: PDB Molecule:bacteriophytochrome (light-regulated signal transduction
PDBTitle: rpbphp2 chromophore-binding domain crystallized by homologue-directed2 mutagenesis.
56c2au3A_



not modelled 83.7 14 PDB header:transferase
Chain: A: PDB Molecule:dna primase;
PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains)
57c2o9bA_



not modelled 81.5 15 PDB header:transferase
Chain: A: PDB Molecule:bacteriophytochrome;
PDBTitle: crystal structure of bacteriophytochrome chromophore binding domain
58c2xssB_



not modelled 78.8 11 PDB header:hydrolase
Chain: B: PDB Molecule:cgmp-specific 3', 5'-cyclic phosphodiesterase;
PDBTitle: crystal structure of gafb from the human phosphodiesterase 5
59c3su8X_



not modelled 76.3 29 PDB header:apoptosis/signaling protein
Chain: X: PDB Molecule:plexin-b1;
PDBTitle: crystal structure of a truncated intracellular domain of plexin-b1 in2 complex with rac1
60c2rbgB_



not modelled 75.3 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein st0493;
PDBTitle: crystal structure of hypothetical protein(st0493) from2 sulfolobus tokodaii
61c2w1tB_



not modelled 74.8 17 PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: crystal structure of b. subtilis spovt
62c3hm6X_



not modelled 74.1 29 PDB header:signaling protein
Chain: X: PDB Molecule:plexin-b1;
PDBTitle: crystal structure of the cytoplasmic domain of human plexin b1
63c2g7uB_



not modelled 73.9 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
64d2o9aa1



not modelled 72.5 15 Fold:Profilin-like
Superfamily:GAF domain-like
Family:IclR ligand-binding domain-like
65c2o0yB_



not modelled 72.5 13 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.
66c3ig3A_



not modelled 66.4 16 PDB header:signaling protein, membrane protein
Chain: A: PDB Molecule:plxna3 protein;
PDBTitle: crystal strucure of mouse plexin a3 intracellular domain
67d3by8a1



not modelled 65.8 13 Fold:Profilin-like
Superfamily:Sensory domain-like
Family:Sensory domain of two-component sensor kinase
68c2veaA_



not modelled 63.8 13 PDB header:transferase
Chain: A: PDB Molecule:phytochrome-like protein cph1;
PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state.
69c2ia2D_



not modelled 63.8 12 PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1
70c2w1rA_



not modelled 60.8 13 PDB header:transcription
Chain: A: PDB Molecule:stage v sporulation protein t;
PDBTitle: crystal structure of the c-terminal domain of b. subtilis2 spovt
71c1mkmA_



not modelled 60.7 10 PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
72c1yspA_



not modelled 57.3 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr.
73d1tf1a_



not modelled 56.3 14 Fold:Profilin-like
Superfamily:GAF domain-like
Family:IclR ligand-binding domain-like
74c3hpbA_



54.8 29 PDB header:protein transport
Chain: A: PDB Molecule:snx5 protein;
PDBTitle: crystal structure of snx5-px domain in p212121 space group
75d1guqa2



not modelled 54.7 9 Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
76d1z2wa1



not modelled 53.5 20 Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:YfcE-like
77c3zxuC_



not modelled 52.1 21 PDB header:cell cycle
Chain: C: PDB Molecule:mcm21;
PDBTitle: crystal structure of the ctf19-mcm21 kinetochore heterodimer from2 yeast
78c3fldA_



not modelled 51.3 25 PDB header:hydrolase
Chain: A: PDB Molecule:protein trai;
PDBTitle: crystal structure of the trai c-terminal domain
79c3r4kD_



not modelled 49.6 15 PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
80c3obfA_



not modelled 49.0 11 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator, iclr family;
PDBTitle: crystal structure of putative transcriptional regulator, iclr family;2 targeted domain 129...302
81c3nybA_



not modelled 46.6 17 PDB header:transferase/rna binding protein
Chain: A: PDB Molecule:poly(a) rna polymerase protein 2;
PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex
82c3uksB_



not modelled 43.1 14 PDB header:hydrolase
Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative;
PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii
83d1rzya_



not modelled 43.0 12 Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
84d1mkma2



not modelled 42.2 12 Fold:Profilin-like
Superfamily:GAF domain-like
Family:IclR ligand-binding domain-like
85c3c2wB_



not modelled 40.4 9 PDB header:signaling protein
Chain: B: PDB Molecule:bacteriophytochrome;
PDBTitle: crystal structure of the photosensory core domain of p. aeruginosa2 bacteriophytochrome pabphp in the pfr state
86c3fosA_



not modelled 40.3 14 PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of two-component sensor histidine kinase domain from2 bacillus subtilis subsp. subtilis str. 168
87c2rajA_



not modelled 38.9 37 PDB header:structural protein
Chain: A: PDB Molecule:sorting nexin-9;
PDBTitle: so4 bound px-bar membrane remodeling unit of sorting nexin 9
88d1q46a1



not modelled 36.5 14 Fold:SAM domain-like
Superfamily:eIF2alpha middle domain-like
Family:eIF2alpha middle domain-like
89c2hq8B_



not modelled 36.4 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:coelenterazine-binding protein ca-bound apo form;
PDBTitle: crystal structure of coelenterazine-binding protein from2 renilla muelleri in the ca loaded apo form
90c4f11A_



not modelled 35.2 31 PDB header:signaling protein
Chain: A: PDB Molecule:gamma-aminobutyric acid type b receptor subunit 2;
PDBTitle: crystal structure of the extracellular domain of human gaba(b)2 receptor gbr2
91d1riqa1



not modelled 34.9 38 Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
92c4gs4A_



not modelled 34.7 18 PDB header:transferase
Chain: A: PDB Molecule:alpha-tubulin n-acetyltransferase;
PDBTitle: structure of the alpha-tubulin acetyltransferase, alpha-tat1
93c3fzgA_



not modelled 34.6 14 PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: structure of the 16s rrna methylase arma
94c3mq0A_



not modelled 32.0 21 PDB header:transcription repressor
Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon;
PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr
95c2pdtD_



not modelled 29.8 25 PDB header:circadian clock protein
Chain: D: PDB Molecule:vivid pas protein vvd;
PDBTitle: 2.3 angstrom structure of phosphodiesterase treated vivid
96c3cqrB_



not modelled 29.6 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:violaxanthin de-epoxidase, chloroplast;
PDBTitle: crystal structure of the lipocalin domain of violaxanthin de-epoxidase2 (vde) at ph5
97c3jpyA_



not modelled 29.5 18 PDB header:transport protein
Chain: A: PDB Molecule:glutamate [nmda] receptor subunit epsilon-2;
PDBTitle: crystal structure of the zinc-bound amino terminal domain of the nmda2 receptor subunit nr2b
98d1j75a_



not modelled 29.4 33 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
99c2gl7C_



not modelled 29.2 29 PDB header:transcription
Chain: C: PDB Molecule:b-cell lymphoma 9 protein;
PDBTitle: crystal structure of a beta-catenin/bcl9/tcf4 complex
100c3sl9D_



not modelled 29.2 29 PDB header:signaling protein, protein binding
Chain: D: PDB Molecule:b-cell cll/lymphoma 9 protein;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
101c1ydmC_



not modelled 28.9 14 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein yqgn;
PDBTitle: x-ray structure of northeast structural genomics target sr44
102d1y23a_



not modelled 28.8 16 Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
103c3u0kA_



not modelled 28.6 14 PDB header:fluorescent protein
Chain: A: PDB Molecule:rcamp;
PDBTitle: crystal structure of the genetically encoded calcium indicator rcamp
104d2ahua2



not modelled 28.6 19 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
105c1ysqA_



not modelled 28.4 19 PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj;
PDBTitle: the crystal structure of transcriptional regulator yaij
106c2lnbA_



not modelled 28.2 33 PDB header:immune system
Chain: A: PDB Molecule:z-dna-binding protein 1;
PDBTitle: solution nmr structure of n-terminal domain (6-74) of human zbp12 protein, northeast structural genomics consortium target hr8174a.
107d1r5la2



not modelled 27.8 11 Fold:SpoIIaa-like
Superfamily:CRAL/TRIO domain
Family:CRAL/TRIO domain
108d1v65a_



not modelled 27.4 23 Fold:KRAB domain (Kruppel-associated box)
Superfamily:KRAB domain (Kruppel-associated box)
Family:KRAB domain (Kruppel-associated box)
109d1ewqa3



not modelled 27.3 14 Fold:Ribonuclease H-like motif
Superfamily:DNA repair protein MutS, domain II
Family:DNA repair protein MutS, domain II
110c2qkpD_



not modelled 27.1 14 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of c-terminal domain of smu_1151c from streptococcus2 mutans
111c3li6G_



not modelled 27.1 19 PDB header:metal binding protein
Chain: G: PDB Molecule:calcium-binding protein;
PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica
112c3li6A_



not modelled 27.1 19 PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein;
PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica
113c3rkxA_



not modelled 26.2 40 PDB header:ligase
Chain: A: PDB Molecule:biotin-[acetyl-coa-carboxylase] ligase;
PDBTitle: structural characterisation of staphylococcus aureus biotin protein2 ligase
114c2c37L_



not modelled 26.1 7 PDB header:hydrolase
Chain: L: PDB Molecule:probable exosome complex exonuclease 1;
PDBTitle: rnase ph core of the archaeal exosome in complex with u82 rna
115d1g33a_



not modelled 25.6 24 Fold:EF Hand-like
Superfamily:EF-hand
Family:Parvalbumin
116c1ih0A_



not modelled 25.2 24 PDB header:contractile protein
Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles;
PDBTitle: structure of the c-domain of human cardiac troponin c in2 complex with ca2+ sensitizer emd 57033
117d1ih0a_



not modelled 25.2 24 Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
118c2aexA_



not modelled 25.1 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:coproporphyrinogen iii oxidase, mitochondrial;
PDBTitle: the 1.58a crystal structure of human coproporphyrinogen oxidase2 reveals the structural basis of hereditary coproporphyria
119c4ienB_



not modelled 25.0 29 PDB header:hydrolase
Chain: B: PDB Molecule:putative acyl-coa hydrolase;
PDBTitle: crystal structure of acyl-coa hydrolase from neisseria meningitidis2 fam18
120d1txna_



not modelled 24.9 25 Fold:Coproporphyrinogen III oxidase
Superfamily:Coproporphyrinogen III oxidase
Family:Coproporphyrinogen III oxidase

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