Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3errB_

Fold library idPDB HeaderMoleculeTitle
c3errB_PDB header: ligaseChain: B: PDB Molecule: fusion protein of microtubule binding domain fromPDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase


Added to library: Tue Mar 16 12:38:49 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DLKRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSI
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP)

TTT



TS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKK
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)
T
SS

TT




STT

GGG

 .........150.........160.........170.........180.........190.........200.........210
Sequence NYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPL
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) TTTS
SS

TTT
TTTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence PPWPGAPVGGEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALL
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)


TTS

SSGGG
S




SS



T
B
TT
SS


B
 .........290.........300.........310.........320.........330.........340.........350
Sequence RFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEA
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) TT


ST
TTTTGGG

TTSS
SSTTTT
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence LPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPY
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
S



S

SSS
SSSSS
S
S
TT

 .........430.........440.........450.........460.........470.........480.........490
Sequence RLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALA
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)


SS
SGGGT
TTT

TTS

 .........500.........510.........520.......
Sequence TPRILAMLLENHQLQDGRVRVPQALIPYMGKEVLEPG
Predicted secondary structure



















SS confidence




































Known secondary structure (DSSP) TB
TTS


GGGTSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D