Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3vkhA_

Fold library idPDB HeaderMoleculeTitle
c3vkhA_PDB header: motor proteinChain: A: PDB Molecule: dynein heavy chain, cytoplasmic;PDBTitle: x-ray structure of a functional full-length dynein motor domain


Added to library: Thu Jan 10 06:30:34 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQRKCKLVRGWDDLFNKLAEHLNSISAMKMSPYY
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP)
TTT
B

TTT

GGGSTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFINQLLPAESTRFKSINSEFIAILKKVSGAPLI
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) TTTTT

GGG


B
 .........150.........160.........170.........180.........190.........200.........210
Sequence LEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMF
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) TTSTTSGGGGGS
TSS
TTTGGGTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVD
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) SS
TTSSTTS
STT


TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQD
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) SS
TTS
TTTBS
S
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYY
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)

TT
SS

BTT
TS

TTSSSSSTT
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence GFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)





S






TTT
SSSSSSTT


SS


 .........500.........510.........520.........530.........540.........550.........560
Sequence QAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLNISLHQDMGIFVTMNP
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) T
TGGGS
TTT
S





TT

B

 .........570.........580.........590.........600.........610.........620.........630
Sequence GYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGL
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
BTTB

S
TTTTTT

S

TTT
SSTTSS


TT


S
 .........640.........650.........660.........670.........680.........690.........700
Sequence RALKSVLVSAGGIKRKCQPPDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPG
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) TTS




TTTT

TT
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence SQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQ
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)







TT



TT
S



SSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence VDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVE
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) S
S




TTTS
T
TTTT

TTSS
GGGS
S


SSTTG
 .........850.........860.........870.........880.........890.........900.........910
Sequence NLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDTLS
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) GGSS

B


TT



B

SS

S

TT

TTTSSSS



GGGS
T
 .........920.........930.........940.........950.........960.........970.........980
Sequence NEPFDPQEKEQQKRNENIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIMDFTRLRVLNSFFSL
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TS
SSTT



STTSS
BSS


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAITPVPANTI
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TTT
SSS


SSTTB


S



TTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PLLDYSVSIDDANWSLWKNKVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMT
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)
GGGB


TTT



BTT




BTTBSS
SS




TT




TTSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDK
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) GGG
TT


SS

TTT

TTS

SSTT
SSTT




T
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSS
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TS

TT
TTTTSS

TTSTT




TT

B






 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTM
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TTS
GGGTTSS
TTT
TT



TTS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence DGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPV
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) SS

TTT

S
TTS
GGGG
SS

SSSSSSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence NRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMN
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)
S







SSTT

B
TTSST
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence GLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGE
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) T





TT

TS


GGG

STS

TTTS
T
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence EFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWF
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TT



STT


SS
TTTTT
TTGGGTSB



 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence GEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEILMAIPPSHRDAVVSSLVYIHQTIGEANIRLLK
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) BS

TTSSSS



TT








SS

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence RQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) SS





 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence EQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPAIIEAQEAVSTIKKKH
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) TTTSGGGGGTTTTGGGTSTS

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LDEIKSLPKPPTPVKLAMEAVCLMLGGKKLEWADIRKKIMEPNFITSIINYDTKKMMTPKIREAITKGYL
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)
SS

TT




GGG
TTT

TT


TTTTT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence EDPGFDYETVNRASKACGPLVKWATAQTYYSEILKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) T
TT


TTTT


SGGGTTS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence TESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKW
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) TTTGGGS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence MIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMN
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) T



TT

TS
TT


STTS
SS

SSS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence QYADKKITKTSFLDSSFMKNLESALRFGCPLLVQDVENIDPVLNPVLNKPSFMIFLFTRDPTAHFTPDLC
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) SSSS




BSSST

B

BB
GGG

TTSTTTTT



B


S
TT



 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence SRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDD
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TS



TTS
STTSS
SSSGGG
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence DSVISTLETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFHLYQFSLRAFLD
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) STTTTTGGGSTT



 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence IFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEW
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) SS
TTSSS


TTTS
TTTSTT


TTT
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence DFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQVGEPII
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) TSSTT
TT




GGGTTT

S
GGGSS

SS
SS



 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence PESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKS
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)
SSSS



TTT
TTTT





S

T
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence SSPLLLCSVPGYDASSKVDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLV
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) TS

TT


TT






BTTSGGGT




B
GGG
TTT
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence QLEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAERS
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) TS



TT


S
TTS
TS







SSSS
SSSSTT
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence RIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTIL
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) GGGGTTTS
SS




SSSS
S


GGGS
T
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence GSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWL
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)




GGG


SSGGGGSTT
TTTT



SSTS
S


TTTT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence GLPENAESLLLSNKARKMINDLQKMQSSEESSSSEDKGKAKPLFRCFEREISTGGKLVKKITNDLANLLT
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) T

TTTTTTTTT

TTTT


TGGG

 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence NYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESVWLGGLLNPEAYITATRQSA
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)
TTTGGGTTS

GGG

S


SS




GGGSS
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence SQLNGRLHASASFNVKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDPIFNNSSSKLSVPVYLNETRS
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) SS








SSSTT

SSSS






SGGGTSSBTT

 .........3020.........3030.........3040..
Sequence ELLFSIDLPYDQSTSKQNWYQRSVSISSWKSD
Predicted secondary structure









SS confidence































Known secondary structure (DSSP) S
B
TTS
TT

SB



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D