Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	I	T	S	L	D	G	Y	R	W	L	K	N	D	I	I	R	G	N	F	Q	P	D	E	K	L	R	M	S	L	L	T	S	R	Y	A	L	G	V	G	P	L	R	E	A	L	S	Q	L	V	A	E	R	L	V	T	V	V	N
Secondary structure
SS confidence
Disorder		?	?	?																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	K	G	Y	R	V	A	S	M	S	E	Q	E	L	L	D	I	F	D	A	R	A	N	M	E	A	M	L	V	S	L	A	I	A	R	G	G	D	E	W	E	A	D	V	L	A	K	A	H	L	L	S	K	L	E	A	C	D	A	S
Secondary structure
SS confidence
Disorder																																																									?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	K	M	L	D	E	W	D	L	R	H	Q	A	F	H	T	A	I	V	A	G	C	G	S	H	Y	L	L	Q	M	R	E	R	L	F	D	L	A	A	R	Y	R	F	I	W	L	R	R	T	V	L	S	V	E	M	L	E	D	K	H
Secondary structure
SS confidence
Disorder		?	?																																														?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Sequence		D	Q	H	Q	T	L	T	A	A	V	L	A	R	D	T	A	R	A	S	E	L	M	R	Q	H	L	L	T	P	I	P	I	I	Q	Q	A	M	A	G	N
Secondary structure
SS confidence
Disorder																																						?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3fms chain A Region: 5 - 219 Aligned: 201 Modelled: 215 Confidence: 100.0% Identity: 20% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of tm0439, a gntr transcriptional2 regulator Phyre2 PDB 3ihu chain A Region: 4 - 216 Aligned: 203 Modelled: 199 Confidence: 100.0% Identity: 17% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of dna binding protein (yp_298823.1) from ralstonia2 eutropha jmp134 at 1.92 a resolution Phyre2 PDB 2hs5 chain A Region: 2 - 217 Aligned: 206 Modelled: 216 Confidence: 100.0% Identity: 17% PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator gntr; PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1 Phyre2 PDB 3c7j chain A Region: 4 - 218 Aligned: 204 Modelled: 215 Confidence: 100.0% Identity: 23% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of transcriptional regulator (gntr family member)2 from pseudomonas syringae pv. tomato str. dc3000 Phyre2 PDB 2di3 chain A Region: 4 - 218 Aligned: 215 Modelled: 215 Confidence: 100.0% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family; PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum Phyre2 PDB 1e2x chain A Region: 8 - 215 Aligned: 204 Modelled: 208 Confidence: 100.0% Identity: 15% PDB header:transcriptional regulation Chain: A: PDB Molecule:fatty acid metabolism regulator protein; PDBTitle: fadr, fatty acid responsive transcription factor from e.2 coli Phyre2 PDB 3bwg chain A Region: 6 - 81 Aligned: 76 Modelled: 76 Confidence: 99.7% Identity: 13% PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 Phyre2 PDB 2du9 chain A Region: 6 - 113 Aligned: 108 Modelled: 108 Confidence: 99.7% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulators; PDBTitle: crystal structure of the transcriptional factor from c.glutamicum Phyre2 PDB 3by6 chain C Region: 6 - 106 Aligned: 101 Modelled: 101 Confidence: 99.7% Identity: 12% PDB header:transcription regulator Chain: C: PDB Molecule:predicted transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni Phyre2 PDB 3neu chain A Region: 6 - 94 Aligned: 89 Modelled: 89 Confidence: 99.7% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1836 protein; PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262 Phyre2 PDB 3edp chain B Region: 6 - 68 Aligned: 61 Modelled: 63 Confidence: 99.7% Identity: 25% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 Phyre2 PDB 2hs5 chain A domain 1 Region: 2 - 70 Aligned: 69 Modelled: 69 Confidence: 99.6% Identity: 25% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: GntR-like transcriptional regulators Phyre2 PDB 3bwg chain A domain 1 Region: 7 - 81 Aligned: 75 Modelled: 75 Confidence: 99.6% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: GntR-like transcriptional regulators Phyre2 PDB 3f8m chain A Region: 7 - 68 Aligned: 61 Modelled: 62 Confidence: 99.6% Identity: 11% PDB header:transcription Chain: A: PDB Molecule:gntr-family protein transcriptional regulator; PDBTitle: crystal structure of phnf from mycobacterium smegmatis Phyre2 PDB 3eet chain A Region: 4 - 70 Aligned: 67 Modelled: 67 Confidence: 99.6% Identity: 22% PDB header:transcription regulator Chain: A: PDB Molecule:putative gntr-family transcriptional regulator; PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator Phyre2 PDB 1hw1 chain A domain 1 Region: 4 - 69 Aligned: 66 Modelled: 66 Confidence: 99.6% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: GntR-like transcriptional regulators Phyre2 PDB 1hw1 chain A domain 2 Region: 54 - 219 Aligned: 149 Modelled: 166 Confidence: 99.6% Identity: 11% Fold: GntR ligand-binding domain-like Superfamily: GntR ligand-binding domain-like Family: GntR ligand-binding domain-like Phyre2 PDB 3ic7 chain A Region: 6 - 116 Aligned: 111 Modelled: 111 Confidence: 99.6% Identity: 9% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron Phyre2 PDB 1v4r chain A domain 1 Region: 6 - 68 Aligned: 63 Modelled: 63 Confidence: 99.6% Identity: 21% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: GntR-like transcriptional regulators Phyre2 PDB 2hs5 chain A domain 2 Region: 72 - 217 Aligned: 136 Modelled: 146 Confidence: 99.4% Identity: 15% Fold: GntR ligand-binding domain-like Superfamily: GntR ligand-binding domain-like Family: GntR ligand-binding domain-like Phyre2 1 c3fmsA_ 2 c3ihuA_ 3 c2hs5A_ 4 c3c7jA_ 5 c2di3A_ 6 c1e2xA_ 7 c3bwgA_ 8 c2du9A_ 9 c3by6C_ 10 c3neuA_ 11 c3edpB_ 12 d2hs5a1 13 d3bwga1 14 c3f8mA_ 15 c3eetA_ 16 d1hw1a1 17 d1hw1a2 18 c3ic7A_ 19 d1v4ra1 20 d2hs5a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499