PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2fmyB_

Fold library id	PDB Header	Molecule	Title
c2fmyB_	PDB header: dna binding protein	Chain: B: PDB Molecule: carbon monoxide oxidation system transcription	PDBTitle: co-dependent transcription factor cooa from2 carboxydothermus hydrogenoformans (imidazole-bound form)

Links to external resources
Added to library: Tue Mar 16 11:56:58 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A T Q M R L T D T N L L E V L N S E E Y S G V L K E F R E Q R Y S K K A I L Y T P N T E R N L V F L V K S G R V R V Y L A Y E D K E F T L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S
T S G G G T T T G G G
T T
S S
S S
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I L E A G D I F C T H T R A F I Q A M E D T T I L Y T D I R N F Q N I V V E F P A F S L N M V K V L G D L L K N S L T I I N G L V F K D A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S
S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L R L A E F L V Q A A M D T G L K V P Q G I K L E L G L N T E E I A L M L G T T R Q T V S V L L N D F K K M G I L E R V N Q R T L L L K D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T S
T T S T T S

. . . . . . . .

Sequence Q K L K E F S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	T	Q	M	R	L	T	D	T	N	L	L	E	V	L	N	S	E	E	Y	S	G	V	L	K	E	F	R	E	Q	R	Y	S	K	K	A	I	L	Y	T	P	N	T	E	R	N	L	V	F	L	V	K	S	G	R	V	R	V	Y	L	A	Y	E	D	K	E	F	T	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		S		S	S							T	S	G	G	G	T	T	T	G	G	G								T	T						S	S		S	S									S									S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	L	E	A	G	D	I	F	C	T	H	T	R	A	F	I	Q	A	M	E	D	T	T	I	L	Y	T	D	I	R	N	F	Q	N	I	V	V	E	F	P	A	F	S	L	N	M	V	K	V	L	G	D	L	L	K	N	S	L	T	I	I	N	G	L	V	F	K	D	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T					S		S	S						S	S	S																			T																										T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	R	L	A	E	F	L	V	Q	A	A	M	D	T	G	L	K	V	P	Q	G	I	K	L	E	L	G	L	N	T	E	E	I	A	L	M	L	G	T	T	R	Q	T	V	S	V	L	L	N	D	F	K	K	M	G	I	L	E	R	V	N	Q	R	T	L	L	L	K	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T							S											T	S															T	T	S						T	T					S
	.	.	.	.	.	.	.	.
Sequence	Q	K	L	K	E	F	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T