PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3cjnA_

Fold library id	PDB Header	Molecule	Title
c3cjnA_	PDB header: transcription regulator	Chain: A: PDB Molecule: transcriptional regulator, marr family;	PDBTitle: crystal structure of transcriptional regulator, marr family,2 from silicibacter pomeroyi

Links to external resources
Added to library: Tue Mar 16 13:02:13 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R E L A E I G L E G Y A P Y L X N R I X G R Y N A N L R K E X T A L G L S T A K X R A L A I L S A K D G L P I G T L G I F A V V E Q S T L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T T
S
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R A L D G L Q A D G L V R R E V D D Q R S S R V Y L T P A G R A V Y D R L W P H X R A S H D R X F Q G I T P Q E R Q A F L A T L N K X L A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S
T T T

. . . . . .

Sequence I R V H E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	E	L	A	E	I	G	L	E	G	Y	A	P	Y	L	X	N	R	I	X	G	R	Y	N	A	N	L	R	K	E	X	T	A	L	G	L	S	T	A	K	X	R	A	L	A	I	L	S	A	K	D	G	L	P	I	G	T	L	G	I	F	A	V	V	E	Q	S	T	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								G	G	G																			T	T					T															S		S											T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	A	L	D	G	L	Q	A	D	G	L	V	R	R	E	V	D	D	Q	R	S	S	R	V	Y	L	T	P	A	G	R	A	V	Y	D	R	L	W	P	H	X	R	A	S	H	D	R	X	F	Q	G	I	T	P	Q	E	R	Q	A	F	L	A	T	L	N	K	X	L	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S									S	S																												T	T	T
	.	.	.	.	.	.
Sequence	I	R	V	H	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S