PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1zybA_

Fold library id	PDB Header	Molecule	Title
c1zybA_	PDB header: transcription regulator	Chain: A: PDB Molecule: transcription regulator, crp family;	PDBTitle: crystal structure of transcription regulator from2 bacteroides thetaiotaomicron vpi-5482 at 2.15 a resolution

Links to external resources
Added to library: Tue Mar 16 11:58:51 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S D K I H H H H H H X E T X F D T L L Q L P L F Q G L C H E D F T S I L D K V K L H F I K H K A G E T I I K S G N P C T Q L C F L L K G E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G S G G G T T
T S
T T
T T S B
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S I V T N A K E N I Y T V I E Q I E A P Y L I E P Q S L F G X N T N Y A S S Y V A H T E V H T V C I S K A F V L S D L F R Y D I F R L N Y X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
S S
G G G G S S S
B
S S S S
T G G G S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N I V S N R A Q N L Y S R L W D E P T L D L K S K I I R F F L S H C E K P Q G E K T F K V K X D D L A R C L D D T R L N I S K T L N E L Q D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S T T
S S S S S
T S

. . . . . . . . . 220 . . . . . . . . . 230

Sequence N G L I E L H R K E I L I P D A Q K L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T S
G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	D	K	I	H	H	H	H	H	H	X	E	T	X	F	D	T	L	L	Q	L	P	L	F	Q	G	L	C	H	E	D	F	T	S	I	L	D	K	V	K	L	H	F	I	K	H	K	A	G	E	T	I	I	K	S	G	N	P	C	T	Q	L	C	F	L	L	K	G	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	G	G	G	S	G	G	G	T	T												T	S									T	T						T	T	S	B										S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	I	V	T	N	A	K	E	N	I	Y	T	V	I	E	Q	I	E	A	P	Y	L	I	E	P	Q	S	L	F	G	X	N	T	N	Y	A	S	S	Y	V	A	H	T	E	V	H	T	V	C	I	S	K	A	F	V	L	S	D	L	F	R	Y	D	I	F	R	L	N	Y	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G	S									S	S					G	G	G	G	S	S	S			B		S	S					S	S															T	G	G	G	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	I	V	S	N	R	A	Q	N	L	Y	S	R	L	W	D	E	P	T	L	D	L	K	S	K	I	I	R	F	F	L	S	H	C	E	K	P	Q	G	E	K	T	F	K	V	K	X	D	D	L	A	R	C	L	D	D	T	R	L	N	I	S	K	T	L	N	E	L	Q	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S					S											T	T		S	S	S	S	S																T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	N	G	L	I	E	L	H	R	K	E	I	L	I	P	D	A	Q	K	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S					T	T					S		G	G	G	G