Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP45541
DateThu Jan 5 12:03:00 GMT 2012
Unique Job IDa84be27f0681a999

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1i60a_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
Confidence and coverage
Confidence:100.0% Coverage: 96%
265 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQ
Secondary structure 
SS confidence 
Disorder  ??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  MPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  NVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVPSPRLFSMV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  DICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGKMPLRELMRDIIERGY
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270......
Sequence  EGYCTVELVTMYMNEPRLYARQALERFRALLPEDER
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1i60 chain A

3D model

Region: 1 - 273
Aligned: 265
Modelled: 267
Confidence: 100.0%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: Xylose isomerase-like
Family: IolI-like

Phyre2

PDB 3cqk chain B

3D model

Region: 1 - 274
Aligned: 270
Modelled: 274
Confidence: 100.0%
Identity: 14%
PDB header:isomerase
Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae;
PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate

Phyre2

PDB 3kws chain B

3D model

Region: 1 - 274
Aligned: 259
Modelled: 274
Confidence: 100.0%
Identity: 18%
PDB header:isomerase
Chain: B: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution

Phyre2

PDB 2zds chain B

3D model

Region: 3 - 271
Aligned: 265
Modelled: 269
Confidence: 100.0%
Identity: 20%
PDB header:dna binding protein
Chain: B: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2)

Phyre2

PDB 3ktc chain B

3D model

Region: 2 - 270
Aligned: 261
Modelled: 264
Confidence: 100.0%
Identity: 13%
PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution

Phyre2

PDB 2hk1 chain D

3D model

Region: 1 - 272
Aligned: 261
Modelled: 269
Confidence: 100.0%
Identity: 17%
PDB header:isomerase
Chain: D: PDB Molecule:d-psicose 3-epimerase;
PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose

Phyre2

PDB 3dx5 chain A

3D model

Region: 1 - 269
Aligned: 253
Modelled: 265
Confidence: 100.0%
Identity: 14%
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis

Phyre2

PDB 2ou4 chain C

3D model

Region: 2 - 271
Aligned: 259
Modelled: 267
Confidence: 100.0%
Identity: 21%
PDB header:isomerase
Chain: C: PDB Molecule:d-tagatose 3-epimerase;
PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii

Phyre2

PDB 3cny chain A

3D model

Region: 1 - 274
Aligned: 253
Modelled: 264
Confidence: 100.0%
Identity: 16%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol catabolism protein iole;
PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution

Phyre2

PDB 2zvr chain A

3D model

Region: 1 - 271
Aligned: 255
Modelled: 271
Confidence: 100.0%
Identity: 18%
PDB header:isomerase
Chain: A: PDB Molecule:uncharacterized protein tm_0416;
PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima

Phyre2

PDB 2qw5 chain B

3D model

Region: 14 - 273
Aligned: 254
Modelled: 255
Confidence: 100.0%
Identity: 16%
PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase-like tim barrel;
PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution

Phyre2

PDB 1k77 chain A

3D model

Region: 2 - 269
Aligned: 252
Modelled: 268
Confidence: 100.0%
Identity: 15%
Fold: TIM beta/alpha-barrel
Superfamily: Xylose isomerase-like
Family: Hypothetical protein YgbM (EC1530)

Phyre2

PDB 3obe chain B

3D model

Region: 1 - 270
Aligned: 255
Modelled: 261
Confidence: 100.0%
Identity: 15%
PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution

Phyre2

PDB 3ju2 chain A

3D model

Region: 2 - 272
Aligned: 258
Modelled: 265
Confidence: 100.0%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein smc04130;
PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021

Phyre2

PDB 3qxb chain B

3D model

Region: 1 - 272
Aligned: 272
Modelled: 271
Confidence: 100.0%
Identity: 14%
PDB header:isomerase
Chain: B: PDB Molecule:putative xylose isomerase;
PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution

Phyre2

PDB 3l23 chain A

3D model

Region: 1 - 271
Aligned: 257
Modelled: 265
Confidence: 100.0%
Identity: 11%
PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution

Phyre2

PDB 3lmz chain A

3D model

Region: 1 - 274
Aligned: 238
Modelled: 243
Confidence: 100.0%
Identity: 16%
PDB header:isomerase
Chain: A: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution

Phyre2

PDB 3p6l chain A

3D model

Region: 1 - 273
Aligned: 239
Modelled: 239
Confidence: 100.0%
Identity: 18%
PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution

Phyre2

PDB 2g0w chain A domain 1

3D model

Region: 1 - 274
Aligned: 254
Modelled: 266
Confidence: 100.0%
Identity: 15%
Fold: TIM beta/alpha-barrel
Superfamily: Xylose isomerase-like
Family: IolI-like

Phyre2

PDB 1xp3 chain A domain 1

3D model

Region: 1 - 270
Aligned: 266
Modelled: 270
Confidence: 100.0%
Identity: 15%
Fold: TIM beta/alpha-barrel
Superfamily: Xylose isomerase-like
Family: Endonuclease IV

Phyre2
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d1i60a_
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c3cqkB_
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c3kwsB_
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c2zdsB_
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c3ktcB_
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c2hk1D_
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c3dx5A_
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c2ou4C_
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c3cnyA_
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c2zvrA_
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c2qw5B_
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d1k77a_
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c3obeB_
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c3ju2A_
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c3qxbB_
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c3l23A_
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c3lmzA_
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c3p6lA_
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d2g0wa1
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d1xp3a1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1i60a_
100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
2c3cqkB_
100.0 14 PDB header:isomerase
Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae;
PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate
3c3kwsB_
100.0 18 PDB header:isomerase
Chain: B: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution
4c2zdsB_
100.0 20 PDB header:dna binding protein
Chain: B: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2)
5c3ktcB_
100.0 13 PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution
6c2hk1D_
100.0 17 PDB header:isomerase
Chain: D: PDB Molecule:d-psicose 3-epimerase;
PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose
7c3dx5A_
100.0 14 PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
8c2ou4C_
100.0 21 PDB header:isomerase
Chain: C: PDB Molecule:d-tagatose 3-epimerase;
PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii
9c3cnyA_
100.0 16 PDB header:biosynthetic protein
Chain: A: PDB Molecule:inositol catabolism protein iole;
PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution
10c2zvrA_
100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:uncharacterized protein tm_0416;
PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima
11c2qw5B_
100.0 16 PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase-like tim barrel;
PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution
12d1k77a_
100.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Hypothetical protein YgbM (EC1530)
13c3obeB_
100.0 15 PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution
14c3ju2A_
100.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein smc04130;
PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021
15c3qxbB_
100.0 14 PDB header:isomerase
Chain: B: PDB Molecule:putative xylose isomerase;
PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution
16c3l23A_
100.0 11 PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution
17c3lmzA_
100.0 16 PDB header:isomerase
Chain: A: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution
18c3p6lA_
100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution
19d2g0wa1
100.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
20d1xp3a1
100.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Endonuclease IV
21d2q02a1
not modelled 100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:IolI-like
22c3ngfA_
not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:ap endonuclease, family 2;
PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis
23c2x7vA_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:probable endonuclease 4;
PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc
24d1qtwa_
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Endonuclease IV
25d1muwa_
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
26d1qt1a_
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
27d2glka1
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
28d1xima_
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
29d1bxba_
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
30d1bxca_
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
31d1yx1a1
not modelled 100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:KguE-like
32c3aamA_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease iv;
PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8
33d1tz9a_
not modelled 100.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:UxuA-like
34c3bdkB_
not modelled 100.0 11 PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
35d1xlma_
not modelled 100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
36c2i56A_
not modelled 99.9 13 PDB header:isomerase, metal-binding protein
Chain: A: PDB Molecule:l-rhamnose isomerase;
PDBTitle: crystal structure of l-rhamnose isomerase from pseudomonas2 stutzeri with l-rhamnose
37d1a0ea_
not modelled 99.8 12 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
38d1a0da_
not modelled 99.8 14 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
39d1a0ca_
not modelled 99.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Xylose isomerase
40c3bzjA_
not modelled 99.8 21 PDB header:hydrolase
Chain: A: PDB Molecule:uv endonuclease;
PDBTitle: uvde k229l
41d1d8wa_
not modelled 99.1 12 Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:L-rhamnose isomerase
42c3p14C_
not modelled 99.0 13 PDB header:isomerase
Chain: C: PDB Molecule:l-rhamnose isomerase;
PDBTitle: crystal structure of l-rhamnose isomerase with a novel high thermo-2 stability from bacillus halodurans
43c3bwwA_
not modelled 99.0 14 PDB header:metal binding protein
Chain: A: PDB Molecule:protein of unknown function duf692/cog3220;
PDBTitle: crystal structure of a duf692 family protein (hs_1138) from2 haemophilus somnus 129pt at 2.20 a resolution
44c2ftpA_
not modelled 97.6 15 PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa
45c3ivuB_
not modelled 97.4 15 PDB header:transferase
Chain: B: PDB Molecule:homocitrate synthase, mitochondrial;
PDBTitle: homocitrate synthase lys4 bound to 2-og
46c2nx9B_
not modelled 97.0 12 PDB header:lyase
Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha;
PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
47c3bleA_
not modelled 96.9 17 PDB header:transferase
Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans;
PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate
48c1ydoC_
not modelled 96.8 16 PDB header:lyase
Chain: C: PDB Molecule:hmg-coa lyase;
PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181.
49d1nvma2
not modelled 96.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
50c1sr9A_
not modelled 96.6 17 PDB header:transferase
Chain: A: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of leua from mycobacterium tuberculosis
51c1ydnA_
not modelled 96.6 18 PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35.
52c1rr2A_
not modelled 96.5 14 PDB header:transferase
Chain: A: PDB Molecule:transcarboxylase 5s subunit;
PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid
53c3hpxB_
not modelled 96.2 16 PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of mycobacterium tuberculosis leua active site2 domain 1-425 (truncation mutant delta:426-644)
54c1nvmG_
not modelled 95.4 16 PDB header:lyase/oxidoreductase
Chain: G: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
55c3ewbX_
not modelled 95.4 15 PDB header:transferase
Chain: X: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of n-terminal domain of putative 2-2 isopropylmalate synthase from listeria monocytogenes
56c2vg2C_
not modelled 95.2 7 PDB header:transferase
Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase;
PDBTitle: rv2361 with ipp
57c2zq0B_
not modelled 94.9 12 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-glucosidase (alpha-glucosidase susb);
PDBTitle: crystal structure of susb complexed with acarbose
58c3bg3B_
not modelled 94.7 11 PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus)
59c1uz4A_
not modelled 94.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:man5a;
PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis
60d1uuqa_
not modelled 94.7 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
61c3ct7E_
not modelled 94.7 15 PDB header:isomerase
Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase;
PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12
62c2xioA_
not modelled 94.4 13 PDB header:hydrolase
Chain: A: PDB Molecule:putative deoxyribonuclease tatdn1;
PDBTitle: structure of putative deoxyribonuclease tatdn1 isoform a
63d1to3a_
not modelled 93.9 14 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
64d2flia1
not modelled 93.9 8 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
65c3inpA_
not modelled 93.8 10 PDB header:isomerase
Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase;
PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis.
66c2dh3A_
not modelled 93.5 11 PDB header:transport protein, signaling protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: crystal structure of human ed-4f2hc
67c1xc6A_
not modelled 93.5 8 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: native structure of beta-galactosidase from penicillium sp. in complex2 with galactose
68d1h1ya_
not modelled 93.4 15 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
69d1ajza_
not modelled 93.4 17 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
70d1m5wa_
not modelled 93.3 13 Fold:TIM beta/alpha-barrel
Superfamily:Pyridoxine 5'-phosphate synthase
Family:Pyridoxine 5'-phosphate synthase
71d1tg7a5
not modelled 92.8 9 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Glycosyl hydrolases family 35 catalytic domain
72c1wkyA_
not modelled 92.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of alkaline mannanase from bacillus sp. strain jamb-2 602: catalytic domain and its carbohydrate binding module
73c3iwpK_
not modelled 92.6 12 PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc
74d1qwga_
not modelled 92.6 14 Fold:TIM beta/alpha-barrel
Superfamily:(2r)-phospho-3-sulfolactate synthase ComA
Family:(2r)-phospho-3-sulfolactate synthase ComA
75d1wkya2
not modelled 92.1 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
76c3jugA_
not modelled 91.8 13 PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5
77c3a24A_
not modelled 91.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of bt1871 retaining glycosidase
78c2bdqA_
not modelled 91.7 14 PDB header:metal transport
Chain: A: PDB Molecule:copper homeostasis protein cutc;
PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15.
79c3eegB_
not modelled 91.4 14 PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii
80d1rpxa_
not modelled 91.3 7 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
81c3ncoA_
not modelled 91.2 12 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase fncel5a;
PDBTitle: crystal structure of fncel5a from f. nodosum rt17-b1
82c3b4uB_
not modelled 91.2 12 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
83d1ad1a_
not modelled 91.1 16 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
84d2c0ha1
not modelled 90.9 8 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
85c2cw6B_
not modelled 90.8 13 PDB header:lyase
Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial;
PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria
86c2zyfA_
not modelled 90.7 15 PDB header:transferase
Chain: A: PDB Molecule:homocitrate synthase;
PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate
87c1tx2A_
not modelled 90.5 15 PDB header:transferase
Chain: A: PDB Molecule:dhps, dihydropteroate synthase;
PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis
88d1tx2a_
not modelled 90.5 15 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
89d1rh9a1
not modelled 90.4 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
90c3noyA_
not modelled 90.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
91d1tqja_
not modelled 90.0 10 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
92c3pzvB_
not modelled 90.0 12 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168
93c3gk0H_
not modelled 89.6 9 PDB header:transferase
Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei
94c3o6cA_
not modelled 89.4 13 PDB header:transferase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: pyridoxal phosphate biosynthetic protein pdxj from campylobacter2 jejuni
95c2qgqF_
not modelled 89.3 10 PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:protein tm_1862;
PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77
96c3blpX_
not modelled 89.3 15 PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase
97c2d2rA_
not modelled 89.0 8 PDB header:transferase
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase
98c3qc3B_
not modelled 88.0 9 PDB header:isomerase
Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase;
PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution
99d7a3ha_
not modelled 88.0 7 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
100c3ugsB_
not modelled 87.9 13 PDB header:transferase
Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni
101c2cksB_
not modelled 87.8 12 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase e-5;
PDBTitle: x-ray crystal structure of the catalytic domain of2 thermobifida fusca endoglucanase cel5a (e5)
102c3tr9A_
not modelled 87.8 17 PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii
103c3pzqA_
not modelled 87.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family
PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol
104d7odca2
not modelled 87.3 16 Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
105c2h9aB_
not modelled 87.2 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron-
PDBTitle: corrinoid iron-sulfur protein
106d1f75a_
not modelled 86.8 7 Fold:Undecaprenyl diphosphate synthase
Superfamily:Undecaprenyl diphosphate synthase
Family:Undecaprenyl diphosphate synthase
107d1egza_
not modelled 86.6 10 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
108d1twda_
not modelled 86.6 12 Fold:TIM beta/alpha-barrel
Superfamily:CutC-like
Family:CutC-like
109c3d3aA_
not modelled 86.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron
110d1tvna1
not modelled 86.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
111c3dxiB_
not modelled 86.0 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of the n-terminal domain of a putative2 aldolase (bvu_2661) from bacteroides vulgatus
112c3gndC_
not modelled 85.6 12 PDB header:lyase
Chain: C: PDB Molecule:aldolase lsrf;
PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
113d1knwa2
not modelled 85.1 12 Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
114c3sz8D_
not modelled 85.0 13 PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei
115c1jp3A_
not modelled 84.9 10 PDB header:transferase
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase
116d1o98a1
not modelled 84.7 11 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
117c2yfnA_
not modelled 84.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask
118d1o60a_
not modelled 84.7 13 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
119c3cz8A_
not modelled 84.7 17 PDB header:hydrolase
Chain: A: PDB Molecule:putative sporulation-specific glycosylase ydhd;
PDBTitle: crystal structure of putative sporulation-specific glycosylase ydhd2 from bacillus subtilis
120c1d7kB_
not modelled 84.4 12 PDB header:lyase
Chain: B: PDB Molecule:human ornithine decarboxylase;
PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0