Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	N	Q	K	I	Q	N	P	N	P	D	E	L	M	I	E	V	D	L	C	Y	E	L	D	P	Y	E	L	K	L	D	E	M	I	E	A	E	P	E	P	E	M	I	E	G	L	P	A	S	D	A	L	T	P	A	D	R	Y	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?																			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	L	F	E	H	V	Q	S	A	K	I	F	P	D	S	K	T	F	P	D	C	A	P	K	M	D	P	L	D	I	L	I	R	Y	R	K	V	R	R	H	R	D	F	D	L	R	K	F	V	E	N	H	F	W	L	P	E	V	Y	S
Secondary structure
SS confidence
Disorder																																								?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	E	Y	V	S	D	P	Q	N	S	L	K	E	H	I	D	Q	L	W	P	V	L	T	R	E	P	Q	D	H	I	P	W	S	S	L	L	A	L	P	Q	S	Y	I	V	P	G	G	R	F	S	E	T	Y	Y	W	D	S	Y	F	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	L	G	L	A	E	S	G	R	E	D	L	L	K	C	M	A	D	N	F	A	W	M	I	E	N	Y	G	H	I	P	N	G	N	R	T	Y	Y	L	S	R	S	Q	P	P	V	F	A	L	M	V	E	L	F	E	E	D	G	V	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	A	R	R	Y	L	D	H	L	K	M	E	Y	A	F	W	M	D	G	A	E	S	L	I	P	N	Q	A	Y	R	H	V	V	R	M	P	D	G	S	L	L	N	R	Y	W	D	D	R	D	T	P	R	D	E	S	W	L	E	D	V
Secondary structure
SS confidence
Disorder																								?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	T	A	K	H	S	G	R	P	P	N	E	V	Y	R	D	L	R	A	G	A	A	S	G	W	D	Y	S	S	R	W	L	R	D	T	G	R	L	A	S	I	R	T	T	Q	F	I	P	I	D	L	N	A	F	L	F	K	L	E	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	I	A	N	I	S	A	L	K	G	E	K	E	T	E	A	L	F	R	Q	K	A	S	A	R	R	D	A	V	N	R	Y	L	W	D	D	E	N	G	I	Y	R	D	Y	D	W	R	R	E	Q	L	A	L	F	S	A	A	A	I	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		P	L	Y	V	G	M	A	N	H	E	Q	A	D	R	L	A	N	A	V	R	S	R	L	L	T	P	G	G	I	L	A	S	E	Y	E	T	G	E	Q	W	D	K	P	N	G	W	A	P	L	Q	W	M	A	I	Q	G	F	K	M	Y
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		G	D	D	L	L	G	D	E	I	A	R	S	W	L	K	T	V	N	Q	F	Y	L	E	Q	H	K	L	I	E	K	Y	H	I	A	D	G	V	P	R	E	G	G	G	G	E	Y	P	L	Q	D	G	F	G	W	T	N	G	V	V	R
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		R	L	I	G	L	Y	G	E	P
Secondary structure
SS confidence
Disorder									?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jg0 chain A domain 1 Region: 54 - 549 Aligned: 489 Modelled: 496 Confidence: 100.0% Identity: 51% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Trehalase-like Phyre2 PDB 2jg0 chain A Region: 54 - 549 Aligned: 489 Modelled: 496 Confidence: 100.0% Identity: 51% PDB header:hydrolase Chain: A: PDB Molecule:periplasmic trehalase; PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin Phyre2 PDB 3c67 chain B Region: 157 - 548 Aligned: 381 Modelled: 392 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein ygjk; PDBTitle: escherichia coli k12 ygjk in a complexed with glucose Phyre2 PDB 2z07 chain A Region: 159 - 542 Aligned: 349 Modelled: 374 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ttha0978; PDBTitle: crystal structure of uncharacterized conserved protein from2 thermus thermophilus hb8 Phyre2 PDB 1v7w chain A Region: 155 - 546 Aligned: 320 Modelled: 332 Confidence: 99.9% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:chitobiose phosphorylase; PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac Phyre2 PDB 2okx chain B Region: 168 - 544 Aligned: 296 Modelled: 302 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:rhamnosidase b; PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a Phyre2 PDB 1v7w chain A domain 1 Region: 164 - 546 Aligned: 324 Modelled: 326 Confidence: 99.9% Identity: 14% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Glycosyltransferase family 36 C-terminal domain Phyre2 PDB 3cih chain A Region: 179 - 544 Aligned: 281 Modelled: 291 Confidence: 99.9% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:putative alpha-rhamnosidase; PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron Phyre2 PDB 1lf6 chain A domain 1 Region: 160 - 546 Aligned: 295 Modelled: 305 Confidence: 99.8% Identity: 14% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Bacterial glucoamylase C-terminal domain-like Phyre2 PDB 2cqt chain A Region: 160 - 492 Aligned: 286 Modelled: 289 Confidence: 99.8% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:cellobiose phosphorylase; PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate Phyre2 PDB 1lf6 chain A Region: 158 - 544 Aligned: 293 Modelled: 313 Confidence: 99.6% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: crystal structure of bacterial glucoamylase Phyre2 PDB 1ulv chain A domain 1 Region: 158 - 544 Aligned: 302 Modelled: 314 Confidence: 99.3% Identity: 19% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Bacterial glucoamylase C-terminal domain-like Phyre2 PDB 2fba chain A domain 1 Region: 169 - 545 Aligned: 293 Modelled: 304 Confidence: 98.8% Identity: 17% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Glucoamylase Phyre2 PDB 2vn4 chain A Region: 169 - 545 Aligned: 289 Modelled: 304 Confidence: 98.7% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: glycoside hydrolase family 15 glucoamylase from hypocrea2 jecorina Phyre2 PDB 1ug9 chain A Region: 164 - 544 Aligned: 295 Modelled: 305 Confidence: 98.7% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:glucodextranase; PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42 Phyre2 PDB 1gai chain A Region: 169 - 545 Aligned: 290 Modelled: 304 Confidence: 98.6% Identity: 16% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Glucoamylase Phyre2 PDB 2nvp chain A domain 1 Region: 159 - 543 Aligned: 300 Modelled: 317 Confidence: 97.7% Identity: 18% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: CPF0428-like Phyre2 PDB 2ww1 chain B Region: 163 - 416 Aligned: 185 Modelled: 205 Confidence: 97.6% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-1,2-mannosidase; PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside Phyre2 PDB 3qsp chain B Region: 352 - 548 Aligned: 175 Modelled: 192 Confidence: 97.6% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: analysis of a new family of widely distributed metal-independent alpha2 mannosidases provides unique insight into the processing of n-linked3 glycans, streptococcus pneumoniae sp_2144 non-productive substrate4 complex with alpha-1,6-mannobiose Phyre2 PDB 2p0v chain A Region: 159 - 546 Aligned: 303 Modelled: 310 Confidence: 97.5% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bt3781; PDBTitle: crystal structure of bt3781 protein from bacteroides2 thetaiotaomicron, northeast structural genomics target3 btr58 Phyre2 1 d2jg0a1 2 c2jg0A_ 3 c3c67B_ 4 c2z07A_ 5 c1v7wA_ 6 c2okxB_ 7 d1v7wa1 8 c3cihA_ 9 d1lf6a1 10 c2cqtA_ 11 c1lf6A_ 12 d1ulva1 13 d2fbaa1 14 c2vn4A_ 15 c1ug9A_ 16 d1gaia_ 17 d2nvpa1 18 c2ww1B_ 19 c3qspB_ 20 c2p0vA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2jg0a1 100.0 51 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Trehalase-like 2 c2jg0A_ 100.0 51 PDB header:hydrolase Chain: A: PDB Molecule:periplasmic trehalase; PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin 3 c3c67B_ 100.0 17 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein ygjk; PDBTitle: escherichia coli k12 ygjk in a complexed with glucose 4 c2z07A_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ttha0978; PDBTitle: crystal structure of uncharacterized conserved protein from2 thermus thermophilus hb8 5 c1v7wA_ 99.9 16 PDB header:transferase Chain: A: PDB Molecule:chitobiose phosphorylase; PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac 6 c2okxB_ 99.9 17 PDB header:hydrolase Chain: B: PDB Molecule:rhamnosidase b; PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a 7 d1v7wa1 99.9 14 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glycosyltransferase family 36 C-terminal domain 8 c3cihA_ 99.9 11 PDB header:hydrolase Chain: A: PDB Molecule:putative alpha-rhamnosidase; PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron 9 d1lf6a1 99.8 14 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Bacterial glucoamylase C-terminal domain-like 10 c2cqtA_ 99.8 15 PDB header:transferase Chain: A: PDB Molecule:cellobiose phosphorylase; PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate 11 c1lf6A_ 99.6 17 PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: crystal structure of bacterial glucoamylase 12 d1ulva1 99.3 19 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Bacterial glucoamylase C-terminal domain-like 13 d2fbaa1 98.8 17 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glucoamylase 14 c2vn4A_ 98.7 16 PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: glycoside hydrolase family 15 glucoamylase from hypocrea2 jecorina 15 c1ug9A_ 98.7 18 PDB header:hydrolase Chain: A: PDB Molecule:glucodextranase; PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42 16 d1gaia_ 98.6 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glucoamylase 17 d2nvpa1 97.7 18 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like 18 c2ww1B_ 97.6 17 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-1,2-mannosidase; PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside 19 c3qspB_ 97.6 16 PDB header:hydrolase Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: analysis of a new family of widely distributed metal-independent alpha2 mannosidases provides unique insight into the processing of n-linked3 glycans, streptococcus pneumoniae sp_2144 non-productive substrate4 complex with alpha-1,6-mannobiose 20 c2p0vA_ 97.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bt3781; PDBTitle: crystal structure of bt3781 protein from bacteroides2 thetaiotaomicron, northeast structural genomics target3 btr58 21 d2p0va1 not modelled 97.5 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:CPF0428-like 22 c2eacB_ not modelled 97.3 18 PDB header:hydrolase Chain: B: PDB Molecule:alpha-fucosidase; PDBTitle: crystal structure of 1,2-a-l-fucosidase from2 bifidobacterium bifidum in complex with3 deoxyfuconojirimycin 23 c2wvyA_ not modelled 97.1 20 PDB header:hydrolase Chain: A: PDB Molecule:alpha-1,2-mannosidase; PDBTitle: structure of the family gh92 inverting mannosidase bt21992 from bacteroides thetaiotaomicron vpi-5482 24 d1h54a1 not modelled 96.9 13 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glycosyltransferase family 36 C-terminal domain 25 c2rdyB_ not modelled 94.6 12 PDB header:hydrolase Chain: B: PDB Molecule:bh0842 protein; PDBTitle: crystal structure of a putative glycoside hydrolase family2 protein from bacillus halodurans 26 c1h54B_ not modelled 91.8 14 PDB header:hydrolase Chain: B: PDB Molecule:maltose phosphorylase; PDBTitle: maltose phosphorylase from lactobacillus brevis 27 c3gt5A_ not modelled 85.8 12 PDB header:isomerase Chain: A: PDB Molecule:n-acetylglucosamine 2-epimerase; PDBTitle: crystal structure of an n-acetylglucosamine 2-epimerase family protein2 from xylella fastidiosa 28 c3bhwA_ not modelled 58.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from magnetospirillum2 magneticum 29 d1nzpa_ not modelled 42.0 11 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 30 d2afaa1 not modelled 38.8 15 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase 31 c3k7xA_ not modelled 37.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0763 protein; PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23. 32 c2q07A_ not modelled 35.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af0587; PDBTitle: crystal structure of af0587, a protein of unknown function 33 d1q79a3 not modelled 33.6 12 Fold:Ferredoxin-like Superfamily:PAP/Archaeal CCA-adding enzyme, C-terminal domain Family:Poly(A) polymerase, PAP, C-terminal domain 34 c2gz6B_ not modelled 29.1 15 PDB header:isomerase Chain: B: PDB Molecule:n-acetyl-d-glucosamine 2-epimerase; PDBTitle: crystal structure of anabaena sp. ch1 n-acetyl-d-glucosamine 2-2 epimerase at 2.0 a 35 c2g2dA_ not modelled 28.9 20 PDB header:transferase Chain: A: PDB Molecule:atp:cobalamin adenosyltransferase; PDBTitle: crystal structure of a putative pduo-type atp:cobalamin2 adenosyltransferase from mycobacterium tuberculosis 36 c2qjxA_ not modelled 27.9 9 PDB header:protein binding Chain: A: PDB Molecule:protein bim1; PDBTitle: structural basis of microtubule plus end tracking by2 xmap215, clip-170 and eb1 37 d1aina_ not modelled 26.5 12 Fold:Annexin Superfamily:Annexin Family:Annexin 38 d1wu7a2 not modelled 24.5 25 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 39 d1fp3a_ not modelled 21.9 15 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase 40 c1wy1B_ not modelled 21.7 40 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein ph0671; PDBTitle: crystal structure of the ph0671 protein from pyrococcus horikoshii ot3 41 d2ovra1 not modelled 20.8 13 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 42 c1wyoA_ not modelled 19.8 12 PDB header:structural protein Chain: A: PDB Molecule:microtubule-associated protein rp/eb family PDBTitle: solution structure of the ch domain of human microtubule-2 associated protein rp/eb family member 3 43 d2qjza1 not modelled 18.4 12 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 44 d2bcqa1 not modelled 18.3 14 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 45 d1jmsa1 not modelled 16.5 16 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 46 c3racA_ not modelled 16.0 17 PDB header:ligase Chain: A: PDB Molecule:histidine-trna ligase; PDBTitle: crystal strucutre of histidine--trna ligase subunit from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446. 47 d1dm5a_ not modelled 15.1 11 Fold:Annexin Superfamily:Annexin Family:Annexin 48 d2fmpa1 not modelled 14.6 19 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 49 c3lhrA_ not modelled 14.3 19 PDB header:transcription regulator Chain: A: PDB Molecule:zinc finger protein 24; PDBTitle: crystal structure of the scan domain from human znf24 50 d1mcxa_ not modelled 13.6 12 Fold:Annexin Superfamily:Annexin Family:Annexin 51 c1wvtA_ not modelled 13.6 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st2180; PDBTitle: crystal structure of uncharacterized protein st2180 from sulfolobus2 tokodaii 52 c3ajfA_ not modelled 13.5 22 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus 53 d1rutx4 not modelled 12.7 71 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 54 c2idxA_ not modelled 12.0 33 PDB header:transferase Chain: A: PDB Molecule:cob(i)yrinic acid a,c-diamide PDBTitle: structure of human atp:cobalamin adenosyltransferase bound2 to atp. 55 d1iwpa_ not modelled 11.8 16 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Diol dehydratase, alpha subunit 56 d1zeta2 not modelled 11.2 20 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 57 d1xg7a_ not modelled 10.0 13 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:AgoG-like 58 c1kdhA_ not modelled 9.8 14 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 59 c3qsjA_ not modelled 9.7 26 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 60 d2ie7a1 not modelled 9.7 13 Fold:Annexin Superfamily:Annexin Family:Annexin 61 c3lzzB_ not modelled 9.7 78 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structures of cupin superfamily bbduf985 from branchiostoma2 belcheri tsingtauense in apo and gdp-bound forms 62 d1z3xa1 not modelled 9.5 18 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:GUN4-associated domain 63 d1jq6a_ not modelled 9.1 17 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 64 d1k8kd1 not modelled 8.9 28 Fold:Secretion chaperone-like Superfamily:Arp2/3 complex subunits Family:Arp2/3 complex subunits 65 d1hvda_ not modelled 8.9 13 Fold:Annexin Superfamily:Annexin Family:Annexin 66 c1nj2A_ not modelled 8.8 14 PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus 67 d1avca1 not modelled 8.8 5 Fold:Annexin Superfamily:Annexin Family:Annexin 68 c2fllA_ not modelled 8.6 20 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp 69 c2wseE_ not modelled 8.5 33 PDB header:photosynthesis Chain: E: PDB Molecule:photosystem i reaction center subunit iv a, PDBTitle: improved model of plant photosystem i 70 c1w3wA_ not modelled 8.4 10 PDB header:coagulation Chain: A: PDB Molecule:annexin a8; PDBTitle: the 2.1 angstroem resolution structure of annexin a8 71 c2bcuA_ not modelled 8.3 14 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 72 d1fs1b1 not modelled 8.2 9 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 73 d1w7ba_ not modelled 8.2 5 Fold:Annexin Superfamily:Annexin Family:Annexin 74 d1m9ia2 not modelled 8.1 5 Fold:Annexin Superfamily:Annexin Family:Annexin 75 c3k1qB_ not modelled 8.1 31 PDB header:virus Chain: B: PDB Molecule:vp3a, the building block protein of inner shell; PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics 76 d1alaa_ not modelled 8.1 13 Fold:Annexin Superfamily:Annexin Family:Annexin 77 c2doqD_ not modelled 7.9 27 PDB header:cell cycle Chain: D: PDB Molecule:sfi1p; PDBTitle: crystal structure of sfi1p/cdc31p complex 78 d1nc7a_ not modelled 7.8 47 Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070 79 d1dk2a_ not modelled 7.7 19 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 80 d1riqa1 not modelled 7.5 28 Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 81 d2g4ca2 not modelled 7.4 22 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 82 d1fs2b1 not modelled 7.4 9 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 83 c1t94B_ not modelled 7.4 25 PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa 84 d1psea_ not modelled 7.4 55 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 85 c2lmdA_ not modelled 7.3 67 PDB header:transcription Chain: A: PDB Molecule:prospero homeobox protein 1; PDBTitle: minimal constraints solution nmr structure of prospero homeobox2 protein 1 from homo sapiens, northeast structural genomics consortium3 target hr4660b 86 c2ah6B_ not modelled 7.3 33 PDB header:transferase Chain: B: PDB Molecule:bh1595, unknown conserved protein; PDBTitle: crystal structure of a putative cobalamin adenosyltransferase (bh1595)2 from bacillus halodurans c-125 at 1.60 a resolution 87 d1h6za3 not modelled 7.2 6 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Pyruvate phosphate dikinase, N-terminal domain 88 d2bgxa1 not modelled 7.2 29 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 89 d1z7ma1 not modelled 7.2 21 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 90 c2r7aC_ not modelled 7.1 13 PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae 91 c3pg8B_ not modelled 7.0 20 PDB header:transferase Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima 92 d1gxie_ not modelled 7.0 48 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 93 c1t3nB_ not modelled 7.0 21 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 94 c3k1qC_ not modelled 7.0 31 PDB header:virus Chain: C: PDB Molecule:vp3b, the building block protein of inner shell; PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics 95 d2q07a2 not modelled 6.9 17 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:AF0587 domain-like 96 d1m9ia1 not modelled 6.9 5 Fold:Annexin Superfamily:Annexin Family:Annexin 97 d1usya_ not modelled 6.9 21 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 98 d1r8ea2 not modelled 6.7 14 Fold:Probable bacterial effector-binding domain Superfamily:Probable bacterial effector-binding domain Family:Multidrug-binding domain of transcription activator BmrR 99 d1cfra_ not modelled 6.5 17 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Cfr10I/Bse634I

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0