PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1ug9A_

Fold library id	PDB Header	Molecule	Title
c1ug9A_	PDB header: hydrolase	Chain: A: PDB Molecule: glucodextranase;	PDBTitle: crystal structure of glucodextranase from arthrobacter2 globiformis i42

Links to external resources
Added to library: Tue Mar 16 14:36:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T A E P P G S P G A A A T W T K G D K E G V G T S L N P A S K V W Y T L T E G T M S E V Y Y P H A D T P N T R E L Q F A V S D G T S A Q R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
B
S B
S
S S T T
T T
S S T T
B
S S
G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S E Q T T R T V E L A D P K A L S Y R Q T T T D N A G R W R L T K T Y V T D P R R S T V M L G V T F E V L D G G D Y Q L F V L S D P S L A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G
S S
T T S
T T S S
T T S S
S S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T S G G D T G S V T D G A L L A S D L A D A A T P V A T A L V S S V G F G A V A N G Y V G T S D G W T D L A A D G R L D N A S A T A G P G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T
S S S
T T
S T T T T S S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence I S Q T G Q I P L A A G G K T E F S L A L G F G A D T A E A L A T A K A S L G T G Y K K V S K S Y T G E W K K Y L N S L D A P A T S L T G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S
S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L R T Q Y D V S L M T V K S H E D K T F P G A F I A S L T I P W G Q A A S A E T H R E G Y H A V W A R D M Y Q S V T A L L A A G D E E A A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T B
S S S T T
B
S
S S
T T G G G S B
S S
T T
S B
T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence R G V E W L F T Y Q Q Q P D G H F P Q T S R V D G T I G Q N G I Q L D E T A F P I L L A N Q I G R T D A G F Y R N E L K P A A D Y L V A A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S
S
B
T T
B
T T
T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence P K T P Q E R W E E T G G Y S T S T L A S Q I A A L A A A A D I A G K N G D A G S A A V Y R A T A D E W Q R S T E K W M F T T N G P V G D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B S S
T T S S
B T T
T T S S
S S T T S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence K Y Y L R I S A T G N P N D G A T R D W G N G A G V H P E N A V L D G G F L E F V R L G V K A P A D P Y V A D S L A E T D A S I S Q E T P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
T T S
S T T
G G G
B G G G G T T S S
T T
T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence G R M W H R Y T Y D G Y G E K A D G S P W D G T G I G R L W P L L S G E R G E Y A L A N G Q D A L P Y L E T M H S A A N A G Y M I P E Q V W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B T T
S
T T S
S S
B
T T T
T
T T
S
B

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence D R D E P T S Y G H E L G R S T G S A S P L S W A M A Q Y V R L A A G V K A G A P V E T P Q N V A A R Y A A G T P L S S P E L S V T A P E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T S B
S S
B
T S
S S S
T S S S
S
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence L S T A D S A T A V V R G T T N A A K V Y V S V N G T A T E A P V T D G T F S L D V A L T G A K N K V T V A A V A A D G G T A V E D R T V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S T T
B T T
S S
T T S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence Y Y G S R I G A L S D P A G D D N G P G T Y R Y P T N S A Y V P G A F D L T G V D V Y D A G D D Y A F V A T I A G E V T N P W G G Q A I S H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S T T T T
B
S S T T S
T T T T
T T S S
S
S S
S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence Q R V N I Y L G K G E G G A T P G L P G T N I N L E H A W D S V I V T D G R F D G A G V Y A P D G T R T S A V S L L A V P E A R Q I V T R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S G G G
S S
S
S T T
T T S
G G G T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence P K A A L G G L D P A T A R M S V A M F G N A E S G E G I G N V R P V Y D G A Y W E A G D P A W I K E W R F G G G A G V F D G T I P S R D T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S S S
T T T
B
G G G S T T S B
S S S S
B
S S S T T
B S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . .

Sequence D T D D P N A L D V L V G E G Q T Q A A V L D W R A G S P V V V P M L G L Q P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T
T
G G G S S S
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	A	E	P	P	G	S	P	G	A	A	A	T	W	T	K	G	D	K	E	G	V	G	T	S	L	N	P	A	S	K	V	W	Y	T	L	T	E	G	T	M	S	E	V	Y	Y	P	H	A	D	T	P	N	T	R	E	L	Q	F	A	V	S	D	G	T	S	A	Q	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T					B				S	B		S						S	S	T	T									T	T								S	S	T	T		B												S	S					G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	E	Q	T	T	R	T	V	E	L	A	D	P	K	A	L	S	Y	R	Q	T	T	T	D	N	A	G	R	W	R	L	T	K	T	Y	V	T	D	P	R	R	S	T	V	M	L	G	V	T	F	E	V	L	D	G	G	D	Y	Q	L	F	V	L	S	D	P	S	L	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G		S							S		T	T	S										T	T	S	S											T	T	S	S												S	S													G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	S	G	G	D	T	G	S	V	T	D	G	A	L	L	A	S	D	L	A	D	A	A	T	P	V	A	T	A	L	V	S	S	V	G	F	G	A	V	A	N	G	Y	V	G	T	S	D	G	W	T	D	L	A	A	D	G	R	L	D	N	A	S	A	T	A	G	P	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S							T	T										S	S	S									T	T			S							T	T	T	T	S									S	S						S						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	I	S	Q	T	G	Q	I	P	L	A	A	G	G	K	T	E	F	S	L	A	L	G	F	G	A	D	T	A	E	A	L	A	T	A	K	A	S	L	G	T	G	Y	K	K	V	S	K	S	Y	T	G	E	W	K	K	Y	L	N	S	L	D	A	P	A	T	S	L	T	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S												S	S																																		S					T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	R	T	Q	Y	D	V	S	L	M	T	V	K	S	H	E	D	K	T	F	P	G	A	F	I	A	S	L	T	I	P	W	G	Q	A	A	S	A	E	T	H	R	E	G	Y	H	A	V	W	A	R	D	M	Y	Q	S	V	T	A	L	L	A	A	G	D	E	E	A	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	B		S	S	S	T	T		B		S		S	S		T	T	G	G	G	S	B		S	S				T	T		S	B																T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	R	G	V	E	W	L	F	T	Y	Q	Q	Q	P	D	G	H	F	P	Q	T	S	R	V	D	G	T	I	G	Q	N	G	I	Q	L	D	E	T	A	F	P	I	L	L	A	N	Q	I	G	R	T	D	A	G	F	Y	R	N	E	L	K	P	A	A	D	Y	L	V	A	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T			T	T	S				S		B		T	T			B							T														T										T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	P	K	T	P	Q	E	R	W	E	E	T	G	G	Y	S	T	S	T	L	A	S	Q	I	A	A	L	A	A	A	A	D	I	A	G	K	N	G	D	A	G	S	A	A	V	Y	R	A	T	A	D	E	W	Q	R	S	T	E	K	W	M	F	T	T	N	G	P	V	G	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		B	S	S		T	T	S	S			B																							T	T																	T	T								S	S		S	S	T	T	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	K	Y	Y	L	R	I	S	A	T	G	N	P	N	D	G	A	T	R	D	W	G	N	G	A	G	V	H	P	E	N	A	V	L	D	G	G	F	L	E	F	V	R	L	G	V	K	A	P	A	D	P	Y	V	A	D	S	L	A	E	T	D	A	S	I	S	Q	E	T	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S			S	S	S		T	T	S							S	T	T						G	G	G			B	G	G	G	G					T	T	S	S		T	T																				T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	G	R	M	W	H	R	Y	T	Y	D	G	Y	G	E	K	A	D	G	S	P	W	D	G	T	G	I	G	R	L	W	P	L	L	S	G	E	R	G	E	Y	A	L	A	N	G	Q	D	A	L	P	Y	L	E	T	M	H	S	A	A	N	A	G	Y	M	I	P	E	Q	V	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	B	T	T				S			T	T	S				S	S						B		T													T	T													T			T	T					S		B
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	D	R	D	E	P	T	S	Y	G	H	E	L	G	R	S	T	G	S	A	S	P	L	S	W	A	M	A	Q	Y	V	R	L	A	A	G	V	K	A	G	A	P	V	E	T	P	Q	N	V	A	A	R	Y	A	A	G	T	P	L	S	S	P	E	L	S	V	T	A	P	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S			S	S				T	T	S	B		S	S		B																			T	S		S	S	S									T	S	S	S												S		S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	S	T	A	D	S	A	T	A	V	V	R	G	T	T	N	A	A	K	V	Y	V	S	V	N	G	T	A	T	E	A	P	V	T	D	G	T	F	S	L	D	V	A	L	T	G	A	K	N	K	V	T	V	A	A	V	A	A	D	G	G	T	A	V	E	D	R	T	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S										S	S							T	T								B	T	T										S	S											T	T	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	Y	Y	G	S	R	I	G	A	L	S	D	P	A	G	D	D	N	G	P	G	T	Y	R	Y	P	T	N	S	A	Y	V	P	G	A	F	D	L	T	G	V	D	V	Y	D	A	G	D	D	Y	A	F	V	A	T	I	A	G	E	V	T	N	P	W	G	G	Q	A	I	S	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S										S	S			S	T	T	T	T		B			S	S	T	T	S		T	T	T	T											T	T									S	S						S			S	S		S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	Q	R	V	N	I	Y	L	G	K	G	E	G	G	A	T	P	G	L	P	G	T	N	I	N	L	E	H	A	W	D	S	V	I	V	T	D	G	R	F	D	G	A	G	V	Y	A	P	D	G	T	R	T	S	A	V	S	L	L	A	V	P	E	A	R	Q	I	V	T	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S		S	S					S	G	G	G					S	S			S								S	T	T							T	T	S												G	G	G	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	P	K	A	A	L	G	G	L	D	P	A	T	A	R	M	S	V	A	M	F	G	N	A	E	S	G	E	G	I	G	N	V	R	P	V	Y	D	G	A	Y	W	E	A	G	D	P	A	W	I	K	E	W	R	F	G	G	G	A	G	V	F	D	G	T	I	P	S	R	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	S	S	S			T	T	T										B			G	G	G	S	T	T	S	B													S	S							S					S			B		S	S	S	T	T		B	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.
Sequence	D	T	D	D	P	N	A	L	D	V	L	V	G	E	G	Q	T	Q	A	A	V	L	D	W	R	A	G	S	P	V	V	V	P	M	L	G	L	Q	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S				S						T	T							T		G	G	G	S	S	S									B