PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1t94B_

Fold library id	PDB Header	Molecule	Title
c1t94B_	PDB header: replication	Chain: B: PDB Molecule: polymerase (dna directed) kappa;	PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa

Links to external resources
Added to library: Tue Mar 16 12:31:21 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T S Q Q L R K A Q L Q V D R F A M E L E Q S R N L S N T I V H I D M D A F Y A A V E M R D N P E L K D K P I A V G S M S M L S T S N Y H A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
G G G T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R F G V R A A M P G F I A K R L C P Q L I I V P P N F D K Y R A V S K E V K E I L A D Y D P N F M A M S L D E A Y L N I T K H L E E R Q N W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S S
T T
T T T
T T
S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P E D K R R Y F I K Q N S V V F G T S A Q E V V K E I R F R I E Q K T T L T A S A G I A P N T M L A K V C S D K N K P N G Q Y Q I L P N R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
S S S S
S S T T T T
S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A V M D F I K D L P I R K V S G I G K V T E K M L K A L G I I T C T E L Y Q Q R A L L S L L F S E T S W H Y F L H I S L G L G S T H L T R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B G G G
T T S
G G G T
B T S
T T
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence K S M S V E R T F S E I N K A E E Q Y S L C Q E L C S E L A Q D L Q K E R L K G R T V T I K L K N V N F E V K T R A S T S V V S T A E E I F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S T T S
S T T T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . .

Sequence A I A K E L L K T E I D A D F P H P L R L R L M G V R I S S F P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	S	Q	Q	L	R	K	A	Q	L	Q	V	D	R	F	A	M	E	L	E	Q	S	R	N	L	S	N	T	I	V	H	I	D	M	D	A	F	Y	A	A	V	E	M	R	D	N	P	E	L	K	D	K	P	I	A	V	G	S	M	S	M	L	S	T	S	N	Y	H	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T													T	T											G	G	G	T	T	S							T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	F	G	V	R	A	A	M	P	G	F	I	A	K	R	L	C	P	Q	L	I	I	V	P	P	N	F	D	K	Y	R	A	V	S	K	E	V	K	E	I	L	A	D	Y	D	P	N	F	M	A	M	S	L	D	E	A	Y	L	N	I	T	K	H	L	E	E	R	Q	N	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T			S	S	S										T	T																							T	T	T		T	T					S	S	S														T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	E	D	K	R	R	Y	F	I	K	Q	N	S	V	V	F	G	T	S	A	Q	E	V	V	K	E	I	R	F	R	I	E	Q	K	T	T	L	T	A	S	A	G	I	A	P	N	T	M	L	A	K	V	C	S	D	K	N	K	P	N	G	Q	Y	Q	I	L	P	N	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	G													S	S																S	S									S	S								T	T	T	T		S	S							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	V	M	D	F	I	K	D	L	P	I	R	K	V	S	G	I	G	K	V	T	E	K	M	L	K	A	L	G	I	I	T	C	T	E	L	Y	Q	Q	R	A	L	L	S	L	L	F	S	E	T	S	W	H	Y	F	L	H	I	S	L	G	L	G	S	T	H	L	T	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T		B	G	G	G		T	T	S									G	G	G	T			B							T								S													T	T				S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	K	S	M	S	V	E	R	T	F	S	E	I	N	K	A	E	E	Q	Y	S	L	C	Q	E	L	C	S	E	L	A	Q	D	L	Q	K	E	R	L	K	G	R	T	V	T	I	K	L	K	N	V	N	F	E	V	K	T	R	A	S	T	S	V	V	S	T	A	E	E	I	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																		T	T	S					S									T	T	S													S	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Sequence	A	I	A	K	E	L	L	K	T	E	I	D	A	D	F	P	H	P	L	R	L	R	L	M	G	V	R	I	S	S	F	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T												S	T	T	S