Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP31453
DateThu Jan 5 11:47:45 GMT 2012
Unique Job ID8223d7591c5c62a7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3bwgA_
Top template information
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk;
PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168
Confidence and coverage
Confidence:100.0% Coverage: 93%
221 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHG
Secondary structure 
SS confidence 
Disorder  ??
????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  SGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIY
Secondary structure 
SS confidence 
Disorder 
????????
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  FSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEYIEQECGILIGGNYESLTPVL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230........
Sequence  ADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPEKS
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3bwg chain A

3D model

Region: 4 - 230
Aligned: 221
Modelled: 227
Confidence: 100.0%
Identity: 25%
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk;
PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168

Phyre2

PDB 3f8m chain A

3D model

Region: 2 - 234
Aligned: 230
Modelled: 231
Confidence: 100.0%
Identity: 18%
PDB header:transcription
Chain: A: PDB Molecule:gntr-family protein transcriptional regulator;
PDBTitle: crystal structure of phnf from mycobacterium smegmatis

Phyre2

PDB 3edp chain B

3D model

Region: 2 - 229
Aligned: 216
Modelled: 227
Confidence: 100.0%
Identity: 24%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin2111 protein;
PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262

Phyre2

PDB 2wv0 chain H

3D model

Region: 2 - 233
Aligned: 214
Modelled: 231
Confidence: 100.0%
Identity: 25%
PDB header:transcription
Chain: H: PDB Molecule:hth-type transcriptional repressor yvoa;
PDBTitle: crystal structure of the gntr-hutc family member yvoa from2 bacillus subtilis

Phyre2

PDB 3eet chain A

3D model

Region: 2 - 231
Aligned: 229
Modelled: 230
Confidence: 100.0%
Identity: 20%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative gntr-family transcriptional regulator;
PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator

Phyre2

PDB 3f8l chain C

3D model

Region: 72 - 231
Aligned: 160
Modelled: 160
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: C: PDB Molecule:hth-type transcriptional repressor phnf;
PDBTitle: crystal structure of the effector domain of phnf from mycobacterium2 smegmatis

Phyre2

PDB 2ogg chain A domain 1

3D model

Region: 91 - 232
Aligned: 142
Modelled: 142
Confidence: 99.9%
Identity: 20%
Fold: Chorismate lyase-like
Superfamily: Chorismate lyase-like
Family: UTRA domain

Phyre2

PDB 2ooi chain A domain 1

3D model

Region: 75 - 231
Aligned: 157
Modelled: 157
Confidence: 99.9%
Identity: 18%
Fold: Chorismate lyase-like
Superfamily: Chorismate lyase-like
Family: UTRA domain

Phyre2

PDB 2fa1 chain A domain 1

3D model

Region: 74 - 229
Aligned: 156
Modelled: 156
Confidence: 99.9%
Identity: 21%
Fold: Chorismate lyase-like
Superfamily: Chorismate lyase-like
Family: UTRA domain

Phyre2

PDB 3cnv chain A domain 1

3D model

Region: 81 - 230
Aligned: 150
Modelled: 150
Confidence: 99.9%
Identity: 23%
Fold: Chorismate lyase-like
Superfamily: Chorismate lyase-like
Family: UTRA domain

Phyre2

PDB 2p19 chain A domain 1

3D model

Region: 85 - 232
Aligned: 147
Modelled: 148
Confidence: 99.9%
Identity: 17%
Fold: Chorismate lyase-like
Superfamily: Chorismate lyase-like
Family: UTRA domain

Phyre2

PDB 2ra5 chain A

3D model

Region: 88 - 233
Aligned: 145
Modelled: 146
Confidence: 99.9%
Identity: 19%
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator2 from streptomyces coelicolor

Phyre2

PDB 2ra5 chain A domain 1

3D model

Region: 88 - 233
Aligned: 145
Modelled: 146
Confidence: 99.9%
Identity: 19%
Fold: Chorismate lyase-like
Superfamily: Chorismate lyase-like
Family: UTRA domain

Phyre2

PDB 3bwg chain A domain 2

3D model

Region: 88 - 229
Aligned: 142
Modelled: 142
Confidence: 99.9%
Identity: 27%
Fold: Chorismate lyase-like
Superfamily: Chorismate lyase-like
Family: UTRA domain

Phyre2

PDB 2ikk chain A domain 1

3D model

Region: 91 - 229
Aligned: 139
Modelled: 139
Confidence: 99.9%
Identity: 19%
Fold: Chorismate lyase-like
Superfamily: Chorismate lyase-like
Family: UTRA domain

Phyre2

PDB 3hfi chain A

3D model

Region: 92 - 226
Aligned: 135
Modelled: 135
Confidence: 99.9%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative regulator;
PDBTitle: the crystal structure of the putative regulator from escherichia coli2 cft073

Phyre2

PDB 3neu chain A

3D model

Region: 2 - 68
Aligned: 67
Modelled: 67
Confidence: 99.8%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262

Phyre2

PDB 2du9 chain A

3D model

Region: 2 - 69
Aligned: 68
Modelled: 68
Confidence: 99.8%
Identity: 22%
PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulators;
PDBTitle: crystal structure of the transcriptional factor from c.glutamicum

Phyre2

PDB 3by6 chain C

3D model

Region: 2 - 68
Aligned: 67
Modelled: 67
Confidence: 99.8%
Identity: 21%
PDB header:transcription regulator
Chain: C: PDB Molecule:predicted transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni

Phyre2

PDB 2pkh chain A domain 1

3D model

Region: 90 - 232
Aligned: 141
Modelled: 143
Confidence: 99.8%
Identity: 14%
Fold: Chorismate lyase-like
Superfamily: Chorismate lyase-like
Family: UTRA domain

Phyre2
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c3bwgA_
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c3f8mA_
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c3edpB_
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c2wv0H_
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c3eetA_
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c3f8lC_
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d2ogga1
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d2ooia1
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d2fa1a1
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d3cnva1
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d2p19a1
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c2ra5A_
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d2ra5a1
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d3bwga2
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d2ikka1
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c3hfiA_
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c3neuA_
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c2du9A_
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c3by6C_
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d2pkha1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bwgA_
100.0 25 PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk;
PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168
2c3f8mA_
100.0 18 PDB header:transcription
Chain: A: PDB Molecule:gntr-family protein transcriptional regulator;
PDBTitle: crystal structure of phnf from mycobacterium smegmatis
3c3edpB_
100.0 24 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin2111 protein;
PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262
4c2wv0H_
100.0 25 PDB header:transcription
Chain: H: PDB Molecule:hth-type transcriptional repressor yvoa;
PDBTitle: crystal structure of the gntr-hutc family member yvoa from2 bacillus subtilis
5c3eetA_
100.0 20 PDB header:transcription regulator
Chain: A: PDB Molecule:putative gntr-family transcriptional regulator;
PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator
6c3f8lC_
99.9 15 PDB header:transcription
Chain: C: PDB Molecule:hth-type transcriptional repressor phnf;
PDBTitle: crystal structure of the effector domain of phnf from mycobacterium2 smegmatis
7d2ogga1
99.9 20 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
8d2ooia1
99.9 18 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
9d2fa1a1
99.9 21 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
10d3cnva1
99.9 23 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
11d2p19a1
99.9 17 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
12c2ra5A_
99.9 19 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator2 from streptomyces coelicolor
13d2ra5a1
99.9 19 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
14d3bwga2
99.9 27 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
15d2ikka1
99.9 19 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
16c3hfiA_
99.9 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative regulator;
PDBTitle: the crystal structure of the putative regulator from escherichia coli2 cft073
17c3neuA_
99.8 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262
18c2du9A_
99.8 22 PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulators;
PDBTitle: crystal structure of the transcriptional factor from c.glutamicum
19c3by6C_
99.8 21 PDB header:transcription regulator
Chain: C: PDB Molecule:predicted transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni
20d2pkha1
99.8 14 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
21c3lheA_
not modelled 99.8 21 PDB header:transcription regulator
Chain: A: PDB Molecule:gntr family transcriptional regulator;
PDBTitle: the crystal structure of the c-terminal domain of a gntr2 family transcriptional regulator from bacillus anthracis3 str. sterne
22d1v4ra1
not modelled 99.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
23c2di3A_
not modelled 99.8 29 PDB header:transcription
Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family;
PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum
24c1e2xA_
not modelled 99.8 23 PDB header:transcriptional regulation
Chain: A: PDB Molecule:fatty acid metabolism regulator protein;
PDBTitle: fadr, fatty acid responsive transcription factor from e.2 coli
25c3ic7A_
not modelled 99.8 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron
26d3bwga1
not modelled 99.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
27c3fmsA_
not modelled 99.8 21 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: crystal structure of tm0439, a gntr transcriptional2 regulator
28c3c7jA_
not modelled 99.8 26 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: crystal structure of transcriptional regulator (gntr family member)2 from pseudomonas syringae pv. tomato str. dc3000
29c3ihuA_
not modelled 99.8 24 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: crystal structure of dna binding protein (yp_298823.1) from ralstonia2 eutropha jmp134 at 1.92 a resolution
30d1hw1a1
not modelled 99.8 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
31d3ddva1
not modelled 99.8 20 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
32c2hs5A_
not modelled 99.7 25 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator gntr;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1
33d2hs5a1
not modelled 99.7 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
34c3tqnC_
not modelled 99.7 14 PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: structure of the transcriptional regulator of the gntr family, from2 coxiella burnetii.
35c2h09A_
not modelled 98.1 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
36d1biaa1
not modelled 98.0 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
37d1stza1
not modelled 97.9 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
38d1jhfa1
not modelled 97.9 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
39c1f5tA_
not modelled 97.8 21 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
40c2it0A_
not modelled 97.7 14 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
41c3hruA_
not modelled 97.5 20 PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
42c3ctaA_
not modelled 97.4 20 PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase;
PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum
43d1g3wa1
not modelled 97.4 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
44d1j5ya1
not modelled 97.3 35 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
45d1i5za1
not modelled 97.3 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
46c2ewnA_
not modelled 97.3 18 PDB header:ligase, transcription
Chain: A: PDB Molecule:bira bifunctional protein;
PDBTitle: ecoli biotin repressor with co-repressor analog
47d2isya1
not modelled 97.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
48c2y75F_
not modelled 97.2 17 PDB header:transcription
Chain: F: PDB Molecule:hth-type transcriptional regulator cymr;
PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis
49c3k69A_
not modelled 97.2 19 PDB header:transcription
Chain: A: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution
50c1g3wA_
not modelled 97.2 20 PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
51c2v79B_
not modelled 97.2 17 PDB header:dna-binding protein
Chain: B: PDB Molecule:dna replication protein dnad;
PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis
52c1j5yA_
not modelled 97.1 30 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, biotin repressor family;
PDBTitle: crystal structure of transcriptional regulator (tm1602) from2 thermotoga maritima at 2.3 a resolution
53c3r0aB_
not modelled 97.1 13 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
54c3lwfD_
not modelled 97.1 16 PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution
55d1xd7a_
not modelled 97.0 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
56d1ft9a1
not modelled 96.9 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
57c1ft9A_
not modelled 96.8 22 PDB header:transcription
Chain: A: PDB Molecule:carbon monoxide oxidation system transcription
PDBTitle: structure of the reduced (feii) co-sensing protein from r.2 rubrum
58d2gaua1
not modelled 96.7 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
59c1fx7C_
not modelled 96.6 19 PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
60d2h6ca1
not modelled 96.6 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
61d2oz6a1
not modelled 96.6 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
62c2x4hA_
not modelled 96.6 14 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
63c2vn2B_
not modelled 96.5 19 PDB header:replication
Chain: B: PDB Molecule:chromosome replication initiation protein;
PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426
64d2coha1
not modelled 96.5 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
65c2gauA_
not modelled 96.4 10 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of transcriptional regulator, crp/fnr family from2 porphyromonas gingivalis (apc80792), structural genomics, mcsg
66c1zybA_
not modelled 96.4 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator, crp family;
PDBTitle: crystal structure of transcription regulator from bacteroides2 thetaiotaomicron vpi-5482 at 2.15 a resolution
67c2oz6A_
not modelled 96.4 17 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence factor regulator;
PDBTitle: crystal structure of virulence factor regulator from pseudomonas2 aeruginosa in complex with camp
68c3d0sA_
not modelled 96.3 22 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: camp receptor protein from m.tuberculosis, camp-free form
69d2bgca1
not modelled 96.3 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
70d3e5ua1
not modelled 96.2 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
71d2d1ha1
not modelled 96.2 32 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
72c3e97A_
not modelled 96.1 20 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of transcriptional regulator of crp/fnr2 family (yp_604437.1) from deinococcus geothermalis dsm3 11300 at 1.86 a resolution
73c3e6dA_
not modelled 96.1 14 PDB header:transcription regulation
Chain: A: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: crystal structure of cprk c200s
74d1sfxa_
not modelled 96.1 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
75c2zy3A_
not modelled 96.1 12 PDB header:lyase
Chain: A: PDB Molecule:l-aspartate beta-decarboxylase;
PDBTitle: dodecameric l-aspartate beta-decarboxylase
76d1ylfa1
not modelled 96.0 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
77d3ctaa1
not modelled 96.0 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
78c2zcwA_
not modelled 96.0 25 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, fnr/crp family;
PDBTitle: crystal structure of ttha1359, a transcriptional regulator,2 crp/fnr family from thermus thermophilus hb8
79c3kccA_
not modelled 96.0 14 PDB header:transcription
Chain: A: PDB Molecule:catabolite gene activator;
PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein
80d1ku9a_
not modelled 96.0 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
81d2cg4a1
not modelled 95.9 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
82c1zreB_
not modelled 95.9 14 PDB header:gene regulation/dna
Chain: B: PDB Molecule:catabolite gene activator;
PDBTitle: 4 crystal structures of cap-dna with all base-pair2 substitutions at position 6, cap-[6g;17c]icap38 dna
83c2zdbA_
not modelled 95.8 19 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp family;
PDBTitle: crystal structure of tthb099, a transcriptional regulator crp family2 from thermus thermophilus hb8
84c3iwzB_
not modelled 95.8 20 PDB header:transcription
Chain: B: PDB Molecule:catabolite activation-like protein;
PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris
85d3broa1
not modelled 95.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
86c3k2zA_
not modelled 95.8 11 PDB header:hydrolase
Chain: A: PDB Molecule:lexa repressor;
PDBTitle: crystal structure of a lexa protein from thermotoga maritima
87c3bj6B_
not modelled 95.8 20 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
88c2fmyB_
not modelled 95.8 14 PDB header:dna binding protein
Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator
PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form)
89c2ev5B_
not modelled 95.8 19 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
90c2fxaB_
not modelled 95.7 16 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
91d2ev0a1
not modelled 95.7 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
92c3dv8A_
not modelled 95.7 20 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of a putative transcriptional regulator of the2 crp/fnr family (eubrec_1222) from eubacterium rectale atcc 33656 at3 2.55 a resolution
93d2nwia1
not modelled 95.5 17 Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:AF1396-like
94c2l4aA_
not modelled 95.5 11 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
95c3nqoB_
not modelled 95.5 15 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
96d2fxaa1
not modelled 95.5 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
97d1i1ga1
not modelled 95.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
98c2oqgA_
not modelled 95.4 24 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
99d2fbha1
not modelled 95.4 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
100c2gxgA_
not modelled 95.4 30 PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
101c2qwwB_
not modelled 95.4 20 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
102c3tgnA_
not modelled 95.4 29 PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
103d2bv6a1
not modelled 95.4 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
104c3la2A_
not modelled 95.3 14 PDB header:transcription
Chain: A: PDB Molecule:global nitrogen regulator;
PDBTitle: crystal structure of ntca in complex with 2-oxoglutarate
105d2cyya1
not modelled 95.2 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
106d1r1ua_
not modelled 95.2 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
107d1p4xa2
not modelled 95.2 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
108c2e7xA_
not modelled 95.2 17 PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
109c3g3zA_
not modelled 95.2 19 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
110c1r22B_
not modelled 95.2 28 PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
111d1mkma1
not modelled 95.2 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
112c2cg4B_
not modelled 95.2 22 PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
113d2cfxa1
not modelled 95.1 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
114c2bgcA_
not modelled 95.1 16 PDB header:transcription
Chain: A: PDB Molecule:prfa;
PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes
115c3f6tA_
not modelled 95.0 16 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
116c3f6vA_
not modelled 95.0 32 PDB header:transcription regulator
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family
PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance
117c1stzB_
not modelled 95.0 16 PDB header:transcription
Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog;
PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution
118c3bjaA_
not modelled 95.0 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
119c2rdpA_
not modelled 95.0 19 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
120c2wteB_
not modelled 94.9 24 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0