Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	L	R	K	L	L	L	P	G	L	L	S	V	T	L	L	S	G	C	S	L	F	N	S	E	E	D	V	V	K	M	S	P	L	P	T	V	E	N	Q	F	T	P	T	T	A	W	S	T	S	V	G	S	G	I	G	N	F	Y
Secondary structure
SS confidence
Disorder		?	?	?	?													?	?	?	?	?	?	?	?			?	?	?	?										?	?	?														?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A
Secondary structure
SS confidence
Disorder																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?																																						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D
Secondary structure
SS confidence
Disorder																																											?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q
Secondary structure
SS confidence
Disorder																						?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Sequence		K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L	I	Q	A	K	D	G	T	V	Y	S	I	T	R
Secondary structure
SS confidence
Disorder						?	?																									?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3p1l chain A Region: 32 - 391 Aligned: 360 Modelled: 360 Confidence: 100.0% Identity: 100% PDB header:protein binding Chain: A: PDB Molecule:lipoprotein yfgl; PDBTitle: crystal structure of escherichia coli bamb, a lipoprotein component of2 the beta-barrel assembly machinery complex, native crystals. Phyre2 PDB 1kv9 chain A Region: 20 - 385 Aligned: 362 Modelled: 366 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5 Phyre2 PDB 1yiq chain A Region: 20 - 385 Aligned: 362 Modelled: 366 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism. Phyre2 PDB 1kb0 chain A Region: 20 - 391 Aligned: 367 Modelled: 372 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni Phyre2 PDB 1flg chain A Region: 23 - 391 Aligned: 366 Modelled: 369 Confidence: 100.0% Identity: 23% Fold: 8-bladed beta-propeller Superfamily: Quinoprotein alcohol dehydrogenase-like Family: Quinoprotein alcohol dehydrogenase-like Phyre2 PDB 1kv9 chain A domain 2 Region: 10 - 391 Aligned: 378 Modelled: 382 Confidence: 100.0% Identity: 17% Fold: 8-bladed beta-propeller Superfamily: Quinoprotein alcohol dehydrogenase-like Family: Quinoprotein alcohol dehydrogenase-like Phyre2 PDB 2ad6 chain A domain 1 Region: 20 - 385 Aligned: 362 Modelled: 365 Confidence: 100.0% Identity: 22% Fold: 8-bladed beta-propeller Superfamily: Quinoprotein alcohol dehydrogenase-like Family: Quinoprotein alcohol dehydrogenase-like Phyre2 PDB 1kb0 chain A domain 2 Region: 20 - 391 Aligned: 369 Modelled: 372 Confidence: 100.0% Identity: 21% Fold: 8-bladed beta-propeller Superfamily: Quinoprotein alcohol dehydrogenase-like Family: Quinoprotein alcohol dehydrogenase-like Phyre2 PDB 1lrw chain A Region: 23 - 385 Aligned: 360 Modelled: 363 Confidence: 100.0% Identity: 15% Fold: 8-bladed beta-propeller Superfamily: Quinoprotein alcohol dehydrogenase-like Family: Quinoprotein alcohol dehydrogenase-like Phyre2 PDB 1w6s chain A Region: 23 - 385 Aligned: 360 Modelled: 363 Confidence: 100.0% Identity: 17% Fold: 8-bladed beta-propeller Superfamily: Quinoprotein alcohol dehydrogenase-like Family: Quinoprotein alcohol dehydrogenase-like Phyre2 PDB 3hxj chain A Region: 48 - 390 Aligned: 302 Modelled: 321 Confidence: 99.9% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:pyrrolo-quinoline quinone; PDBTitle: crystal structure of pyrrolo-quinoline quinone (pqq_dh) from2 methanococcus maripaludis, northeast structural genomics consortium3 target mrr86 Phyre2 PDB 2be1 chain A Region: 68 - 392 Aligned: 226 Modelled: 229 Confidence: 99.8% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:serine/threonine-protein kinase/endoribonuclease ire1; PDBTitle: structure of the compact lumenal domain of yeast ire1 Phyre2 PDB 2hz6 chain A Region: 203 - 380 Aligned: 162 Modelled: 162 Confidence: 99.8% Identity: 13% PDB header:signaling protein Chain: A: PDB Molecule:endoplasmic reticulum to nucleus signalling 1 PDBTitle: the crystal structure of human ire1-alpha luminal domain Phyre2 PDB 1jmx chain B Region: 68 - 380 Aligned: 302 Modelled: 302 Confidence: 99.7% Identity: 8% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Quinohemoprotein amine dehydrogenase B chain Phyre2 PDB 3no2 chain A Region: 69 - 374 Aligned: 249 Modelled: 253 Confidence: 99.7% Identity: 11% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein of unknown function (baccac_01654) from2 bacteroides caccae at 1.35 a resolution Phyre2 PDB 3dm0 chain A Region: 50 - 391 Aligned: 291 Modelled: 299 Confidence: 99.6% Identity: 13% PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Phyre2 PDB 1l0q chain A domain 2 Region: 70 - 367 Aligned: 285 Modelled: 298 Confidence: 99.6% Identity: 9% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: YVTN repeat Phyre2 PDB 2mad chain H Region: 55 - 375 Aligned: 317 Modelled: 317 Confidence: 99.6% Identity: 13% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Methylamine dehydrogenase, H-chain Phyre2 PDB 1pby chain B Region: 69 - 383 Aligned: 300 Modelled: 310 Confidence: 99.6% Identity: 11% Fold: 7-bladed beta-propeller Superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase Family: Quinohemoprotein amine dehydrogenase B chain Phyre2 PDB 1nex chain D Region: 58 - 388 Aligned: 321 Modelled: 330 Confidence: 99.6% Identity: 12% PDB header:ligase, cell cycle Chain: D: PDB Molecule:cdc4 protein; PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex Phyre2 1 c3p1lA_ 2 c1kv9A_ 3 c1yiqA_ 4 c1kb0A_ 5 d1flga_ 6 d1kv9a2 7 d2ad6a1 8 d1kb0a2 9 d1lrwa_ 10 d1w6sa_ 11 c3hxjA_ 12 c2be1A_ 13 c2hz6A_ 14 d1jmxb_ 15 c3no2A_ 16 c3dm0A_ 17 d1l0qa2 18 d2madh_ 19 d1pbyb_ 20 c1nexD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3p1lA_ 100.0 100 PDB header:protein binding Chain: A: PDB Molecule:lipoprotein yfgl; PDBTitle: crystal structure of escherichia coli bamb, a lipoprotein component of2 the beta-barrel assembly machinery complex, native crystals. 2 c1kv9A_ 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5 3 c1yiqA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism. 4 c1kb0A_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni 5 d1flga_ 100.0 23 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 6 d1kv9a2 100.0 17 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 7 d2ad6a1 100.0 22 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 8 d1kb0a2 100.0 21 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 9 d1lrwa_ 100.0 15 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 10 d1w6sa_ 100.0 17 Fold:8-bladed beta-propeller Superfamily:Quinoprotein alcohol dehydrogenase-like Family:Quinoprotein alcohol dehydrogenase-like 11 c3hxjA_ 99.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:pyrrolo-quinoline quinone; PDBTitle: crystal structure of pyrrolo-quinoline quinone (pqq_dh) from2 methanococcus maripaludis, northeast structural genomics consortium3 target mrr86 12 c2be1A_ 99.8 16 PDB header:transcription Chain: A: PDB Molecule:serine/threonine-protein kinase/endoribonuclease ire1; PDBTitle: structure of the compact lumenal domain of yeast ire1 13 c2hz6A_ 99.8 13 PDB header:signaling protein Chain: A: PDB Molecule:endoplasmic reticulum to nucleus signalling 1 PDBTitle: the crystal structure of human ire1-alpha luminal domain 14 d1jmxb_ 99.7 8 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 15 c3no2A_ 99.7 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein of unknown function (baccac_01654) from2 bacteroides caccae at 1.35 a resolution 16 c3dm0A_ 99.6 13 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 17 d1l0qa2 99.6 9 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:YVTN repeat 18 d2madh_ 99.6 13 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 19 d1pbyb_ 99.6 11 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 20 c1nexD_ 99.6 12 PDB header:ligase, cell cycle Chain: D: PDB Molecule:cdc4 protein; PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 21 d2bbkh_ not modelled 99.5 11 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 22 c2ovqB_ not modelled 99.5 10 PDB header:transcription/cell cycle Chain: B: PDB Molecule:f-box/wd repeat protein 7; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 23 c3bwsA_ not modelled 99.5 9 PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 24 c2i0tB_ not modelled 99.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase 25 c1gq1B_ not modelled 99.5 9 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form 26 c2w18A_ not modelled 99.5 10 PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 27 d1nexb2 not modelled 99.4 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 28 c3vh0C_ not modelled 99.4 11 PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna 29 c2j57J_ not modelled 99.4 11 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin. 30 c2h47F_ not modelled 99.4 10 PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 31 c3c75J_ not modelled 99.4 10 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 32 c1nnoA_ not modelled 99.4 8 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa 33 c3mbrX_ not modelled 99.3 14 PDB header:transferase Chain: X: PDB Molecule:glutamine cyclotransferase; PDBTitle: crystal structure of the glutaminyl cyclase from xanthomonas2 campestris 34 c3jzhA_ not modelled 99.3 10 PDB header:gene regulation Chain: A: PDB Molecule:polycomb protein eed; PDBTitle: eed-h3k79me3 35 c3mkqA_ not modelled 99.2 10 PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 36 c1l0qC_ not modelled 99.2 9 PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein 37 c3nolA_ not modelled 99.2 12 PDB header:transferase Chain: A: PDB Molecule:glutamine cyclotransferase; PDBTitle: crystal structure of zymomonas mobilis glutaminyl cyclase (trigonal2 form) 38 c3iytG_ not modelled 99.2 13 PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex 39 d1nira2 not modelled 99.2 10 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 40 d1nr0a1 not modelled 99.1 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 41 c3dw8B_ not modelled 99.1 8 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2a 55 kda regulatory PDBTitle: structure of a protein phosphatase 2a holoenzyme with b55 subunit 42 c2qxvA_ not modelled 99.1 9 PDB header:gene regulation Chain: A: PDB Molecule:embryonic ectoderm development; PDBTitle: structural basis of ezh2 recognition by eed 43 c3dsmA_ not modelled 99.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bacuni_02894; PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d. 44 c4a11B_ not modelled 99.1 10 PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex 45 c3u4yA_ not modelled 99.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771. 46 c3lrvA_ not modelled 99.1 13 PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. 47 d1yfqa_ not modelled 99.1 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:Cell cycle arrest protein BUB3 48 c2oajA_ not modelled 99.1 12 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae 49 c3odtB_ not modelled 99.1 11 PDB header:nuclear protein Chain: B: PDB Molecule:protein doa1; PDBTitle: crystal structure of wd40 beta propeller domain of doa1 50 c2pbiB_ not modelled 99.0 11 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta 5; PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure 51 c3nokB_ not modelled 99.0 12 PDB header:transferase Chain: B: PDB Molecule:glutaminyl cyclase; PDBTitle: crystal structure of myxococcus xanthus glutaminyl cyclase 52 c1r5mA_ not modelled 99.0 10 PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 53 c3i2nA_ not modelled 99.0 13 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 92; PDBTitle: crystal structure of wd40 repeats protein wdr92 54 c2gnqA_ not modelled 99.0 12 PDB header:transcription Chain: A: PDB Molecule:wd-repeat protein 5; PDBTitle: structure of wdr5 55 d1qksa2 not modelled 99.0 12 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 56 c3acpA_ not modelled 99.0 12 PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome 57 d2ovrb2 not modelled 98.9 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 58 d1fwxa2 not modelled 98.9 11 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 59 c1vyhT_ not modelled 98.9 10 PDB header:hydrolase Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib PDBTitle: paf-ah holoenzyme: lis1/alfa2 60 d1vyhc1 not modelled 98.9 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 61 c3mmyE_ not modelled 98.9 10 PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 62 d1tbga_ not modelled 98.9 8 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 63 c2iwaA_ not modelled 98.9 10 PDB header:transferase Chain: A: PDB Molecule:glutamine cyclotransferase; PDBTitle: unbound glutaminyl cyclotransferase from carica papaya. 64 c3eg6A_ not modelled 98.9 11 PDB header:protein binding Chain: A: PDB Molecule:wd repeat-containing protein 5; PDBTitle: structure of wdr5 bound to mll1 peptide 65 c3ei4D_ not modelled 98.9 13 PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex 66 c1p22A_ not modelled 98.8 9 PDB header:signaling protein Chain: A: PDB Molecule:f-box/wd-repeat protein 1a; PDBTitle: structure of a beta-trcp1-skp1-beta-catenin complex:2 destruction motif binding and lysine specificity on the3 scfbeta-trcp1 ubiquitin ligase 67 d1k32a3 not modelled 98.8 10 Fold:7-bladed beta-propeller Superfamily:Tricorn protease domain 2 Family:Tricorn protease domain 2 68 d1erja_ not modelled 98.8 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 69 c3ei3B_ not modelled 98.8 6 PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex 70 d1pgua1 not modelled 98.7 14 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 71 c3frxB_ not modelled 98.7 9 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta- PDBTitle: crystal structure of the yeast orthologue of rack1, asc1. 72 c2pm9A_ not modelled 98.7 8 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat 73 c3ow8A_ not modelled 98.7 11 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 61; PDBTitle: crystal structure of the wd repeat-containing protein 61 74 c3e5zA_ not modelled 98.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 75 c3g4hB_ not modelled 98.6 10 PDB header:hydrolase Chain: B: PDB Molecule:regucalcin; PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound) 76 c1pi6A_ not modelled 98.6 8 PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form 77 c2xznR_ not modelled 98.6 8 PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 78 c3iz6a_ not modelled 98.5 11 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 79 c1fwxB_ not modelled 98.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans 80 c1n6dE_ not modelled 98.5 14 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative 81 c1k32E_ not modelled 98.5 14 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease 82 c3hx6A_ not modelled 98.5 19 PDB header:cell adhesion Chain: A: PDB Molecule:type 4 fimbrial biogenesis protein pily1; PDBTitle: crystal structure of pseudomonas aeruginosa pily1 c-terminal2 domain 83 c2j04B_ not modelled 98.4 11 PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic 84 d1sq9a_ not modelled 98.4 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 85 c3jroA_ not modelled 98.4 8 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 86 d1qnia2 not modelled 98.3 17 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 87 d1ri6a_ not modelled 98.3 12 Fold:7-bladed beta-propeller Superfamily:Putative isomerase YbhE Family:Putative isomerase YbhE 88 c1nr0A_ not modelled 98.2 9 PDB header:structural protein Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1). 89 d1pjxa_ not modelled 98.1 10 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 90 d1gxra_ not modelled 98.1 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 91 c3pe7A_ not modelled 98.1 8 PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese 92 c3jrpA_ not modelled 98.1 8 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: sec13 with nup145c (aa109-179) insertion blade 93 c2hesX_ not modelled 98.0 7 PDB header:biosynthetic protein Chain: X: PDB Molecule:ydr267cp; PDBTitle: cytosolic iron-sulphur assembly protein- 1 94 c3fhcA_ not modelled 98.0 12 PDB header:transport protein/hydrolase Chain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214 95 c3greA_ not modelled 98.0 10 PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain 96 c1qniE_ not modelled 98.0 12 PDB header:oxidoreductase Chain: E: PDB Molecule:nitrous-oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution 97 c3dr2A_ not modelled 98.0 10 PDB header:hydrolase Chain: A: PDB Molecule:exported gluconolactonase; PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways 98 d1ospo_ not modelled 98.0 9 Fold:open-sided beta-meander Superfamily:Outer surface protein Family:Outer surface protein 99 c2aq5A_ not modelled 98.0 14 PDB header:structural protein Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of murine coronin-1 100 d1nr0a2 not modelled 97.9 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 101 d2ghsa1 not modelled 97.9 14 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 102 c2ghsA_ not modelled 97.9 14 PDB header:calcium-binding protein Chain: A: PDB Molecule:agr_c_1268p; PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution 103 c2g8sB_ not modelled 97.9 8 PDB header:sugar binding protein Chain: B: PDB Molecule:glucose/sorbosone dehydrogenases; PDBTitle: crystal structure of the soluble aldose sugar dehydrogenase2 (asd) from escherichia coli in the apo-form 104 c2fp8A_ not modelled 97.8 10 PDB header:lyase Chain: A: PDB Molecule:strictosidine synthase; PDBTitle: structure of strictosidine synthase, the biosynthetic entry to the2 monoterpenoid indole alkaloid family 105 c3fgbB_ not modelled 97.8 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn; PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b. 106 d1k8kc_ not modelled 97.8 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 107 c3sbrF_ not modelled 97.8 11 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate 108 c3dwlH_ not modelled 97.7 7 PDB header:structural protein Chain: H: PDB Molecule:actin-related protein 2/3 complex subunit 1; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 109 c3ottB_ not modelled 97.6 12 PDB header:transcription Chain: B: PDB Molecule:two-component system sensor histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron 110 c2pm7B_ not modelled 97.6 10 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec13; PDBTitle: crystal structure of yeast sec13/31 edge element of the2 copii vesicular coat, selenomethionine version 111 d1xfda1 not modelled 97.5 10 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 112 d1p22a2 not modelled 97.5 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 113 c3fm0A_ not modelled 97.4 7 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein ciao1; PDBTitle: crystal structure of wd40 protein ciao1 114 d2p4oa1 not modelled 97.2 12 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:All0351-like 115 c2vduB_ not modelled 97.2 9 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(7)-)-methyltransferase- PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex 116 c3dasA_ not modelled 97.1 10 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the pqq-bound form of aldose sugar2 dehydrogenase (adh) from streptomyces coelicolor 117 c2ojhA_ not modelled 97.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1656/agr_c_3050; PDBTitle: the structure of putative tolb from agrobacterium tumefaciens 118 d1pgua2 not modelled 97.0 6 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 119 d1k32a2 not modelled 97.0 10 Fold:6-bladed beta-propeller Superfamily:Tricorn protease N-terminal domain Family:Tricorn protease N-terminal domain 120 c2zkqa_ not modelled 96.9 12 PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0