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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4a11B_

Fold library idPDB HeaderMoleculeTitle
c4a11B_PDB header: dna binding proteinChain: B: PDB Molecule: dna excision repair protein ercc-8;PDBTitle: structure of the hsddb1-hscsa complex


Added to library: Sat Dec 10 18:37:24 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVL
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Known secondary structure (DSSP)
TSS
T
TT



SS

TTT

TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence YDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF
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SSSS


TT
TT

SS

TT
TT
TTSTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR
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Known secondary structure (DSSP) SS

SS
SS

SSSSSSSS






S

SS
TTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT
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Known secondary structure (DSSP) TT
SS

S

TTTT
S


TTTSS
S
SS

TTSSTTS
TTT

B
 .........290.........300.........310.........320.........330.........340.........350
Sequence LVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY
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SS





SSSS
TTTTT




SS
TTTT
 .........360.....
Sequence SGSRDCNILAWVPSL
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Known secondary structure (DSSP) TTS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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