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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3ei3B_

Fold library idPDB HeaderMoleculeTitle
c3ei3B_PDB header: dna binding proteinChain: B: PDB Molecule: dna damage-binding protein 2;PDBTitle: structure of the hsddb1-drddb2 complex


Added to library: Tue Mar 16 13:52:36 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGG
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Known secondary structure (DSSP)


STT


TT



SS

SS
TTBTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY
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Known secondary structure (DSSP)
TTSTT



STT
BTTTTTTTS




SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence CCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN
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Known secondary structure (DSSP) TTTTTTSTTS

SSS

SS
TTTTSGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT
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Known secondary structure (DSSP)

STT

SS

TTTS
SSSTTBTTS
S

B


TTS




 .........290.........300.........310.........320.........330.........340.........350
Sequence WHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNIL
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Known secondary structure (DSSP)
SSSS
B

TTT
TT



TTT


BTTB
S



TTSSTT
 .....
Sequence IWNRE
Predicted secondary structure
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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